DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and slc-25A18.2

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_501198.1 Gene:slc-25A18.2 / 177518 WormBaseID:WBGene00018901 Length:309 Species:Caenorhabditis elegans


Alignment Length:314 Identity:164/314 - (52%)
Similarity:211/314 - (67%) Gaps:30/314 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QHQQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGERMYNSMFDCFRKTYKA---- 75
            :.|....|||::||||:||:||:||||:||||||||||:    |...|..:.|||:|:::|    
 Worm    14 EEQPIRYLPKVLNGGISGIVGVSCVFPMDLVKTRLQNQK----GTSKYTGIADCFKKSWQAGAPG 74

  Fly    76 --EGYFGMYRGSGVNILLITPEKAIKLTANDYFRHKL-TTKDGKLPLTSQMVAGGLAGAFQIIVT 137
              ....|||:|:.|||.||||||||||.|||:|||.| ...|.:|.....|:||..||..|:::|
 Worm    75 RLNQIKGMYQGASVNIFLITPEKAIKLVANDFFRHALMKDHDERLSTPRGMIAGASAGFCQVVIT 139

  Fly   138 TPMELLKIQMQDAGRVAAAAKLAGKTVEKVSATQLASQLI-KDKGIFGLYKGIGATGLRDVTFSI 201
            ||||||||:||.:.             :||.||:|...|: ||.|:..||||:|.|..|||:||.
 Worm   140 TPMELLKIRMQQSS-------------DKVKATKLIWNLLTKDGGVRALYKGLGPTMARDVSFSA 191

  Fly   202 IYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVVKTRLQAIKKADGEKEF 266
            :||||||.|:.||||:.|.||:||||.||::||.||:||:|:|.|.||||||:|.     |...:
 Worm   192 MYFPLFAYLDGLGPRKKDDSGDAVFWASFVSGLTAGATASLSVTPLDVVKTRIQT-----GGSNY 251

  Fly   267 KGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLFGIAQTVYYLGVAEGLLGYQK 320
            .||.....:.|..||..|.|||.:|||:|:||||||||||||:|.||.:||.:|
 Worm   252 NGIFHAFYRILADEGVKALFKGAICRMMVMAPLFGIAQTVYYVGSAEKILGLEK 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 46/83 (55%)
Mito_carr 115..213 CDD:278578 45/98 (46%)
Mito_carr 226..307 CDD:278578 43/80 (54%)
slc-25A18.2NP_501198.1 Mito_carr 17..114 CDD:278578 56/100 (56%)
PTZ00168 18..277 CDD:185494 141/280 (50%)
Mito_carr 117..200 CDD:278578 44/95 (46%)
Mito_carr 216..292 CDD:278578 43/80 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 128 1.000 Domainoid score I3298
eggNOG 1 0.900 - - E1_KOG0750
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H69383
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53612
OrthoDB 1 1.010 - - D458796at33208
OrthoFinder 1 1.000 - - FOG0002230
OrthoInspector 1 1.000 - - mtm4728
orthoMCL 1 0.900 - - OOG6_104895
Panther 1 1.100 - - O PTHR45678
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4126
SonicParanoid 1 1.000 - - X982
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.820

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