DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and K02F3.2

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_001263698.1 Gene:K02F3.2 / 175242 WormBaseID:WBGene00019326 Length:716 Species:Caenorhabditis elegans


Alignment Length:301 Identity:125/301 - (41%)
Similarity:172/301 - (57%) Gaps:31/301 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPN--GERMYNSMFDCFRKTYKAEGYFGMYRGSG 86
            :.:.|.:||..|.|.|:|:||||||:|||:...:  ||.||.:..|||:|..|.||..|:|||..
 Worm   381 RFLLGSVAGACGATAVYPIDLVKTRMQNQRTSGSFVGEVMYKNSLDCFKKVVKFEGLLGLYRGLL 445

  Fly    87 VNILLITPEKAIKLTANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQMQDAG 151
            ..|:.:.||||||||.|||.|.|. |||||:||..:::|||..|..|::.|.|:|::||::|.||
 Worm   446 PQIVGVAPEKAIKLTMNDYMRDKF-TKDGKIPLYGEIIAGGTGGMCQVVFTNPLEIVKIRLQTAG 509

  Fly   152 RVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDVTFSIIYFPLFATLNDLGPR 216
            .|..|.|..|           ...::|:.|..|||||..|..|||:.||.||||.:|... |...
 Worm   510 EVQQAGKKIG-----------VFTVLKELGFLGLYKGSRACFLRDIPFSAIYFPAYAHAK-LASA 562

  Fly   217 RNDG--SGEAVFWCSFLAGL-AAGSTAALAVNPFDVVKTRLQAIKKADGEKEFKGISDCITKTLK 278
            ..||  |...:|..:|:||: |||     .|.|.||:|||||...:| |:..:.|:.||..|.:|
 Worm   563 DEDGMNSPGTLFASAFIAGVPAAG-----LVTPADVIKTRLQVAARA-GQTTYNGVIDCARKLIK 621

  Fly   279 HEGPTAFFKGGLCRMIVIAPLFGIA-------QTVYYLGVA 312
            .|||.:.:||...|:...:|.|.:.       |.::|:..|
 Worm   622 EEGPMSLWKGTAARVCRSSPQFAVTLLTYEVLQRLFYVDFA 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 41/78 (53%)
Mito_carr 115..213 CDD:278578 39/97 (40%)
Mito_carr 226..307 CDD:278578 32/88 (36%)
K02F3.2NP_001263698.1 EF-hand_8 71..121 CDD:290545
PTZ00184 135..>237 CDD:185504
EFh 206..>227 CDD:298682
Mito_carr 376..473 CDD:278578 47/92 (51%)
PTZ00169 382..656 CDD:240302 123/292 (42%)
Mito_carr 473..558 CDD:278578 39/95 (41%)
Mito_carr 569..658 CDD:278578 33/94 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4126
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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