DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and slc25a13

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:XP_031759029.1 Gene:slc25a13 / 100124779 XenbaseID:XB-GENE-1013331 Length:743 Species:Xenopus tropicalis


Alignment Length:299 Identity:129/299 - (43%)
Similarity:176/299 - (58%) Gaps:34/299 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 QFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPN--GERMYNSMFDCFRKTYKAEGYFG 80
            :|||      |.|||.:|.|.|:|:||||||:|||:...:  ||.||.:.||||:|..:.||:||
 Frog   398 RFAL------GSIAGAVGATAVYPIDLVKTRMQNQRSTGSFVGELMYKNSFDCFKKVLRYEGFFG 456

  Fly    81 MYRGSGVNILLITPEKAIKLTANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKI 145
            :|||....:|.:.||||||||.||:.|.|.||.:|.:||.::::|||.||..|:|.|.|:|::||
 Frog   457 LYRGLLPQLLGVAPEKAIKLTVNDFVRDKFTTNEGSIPLLAEILAGGCAGGSQVIFTNPLEIVKI 521

  Fly   146 QMQDAGRVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDVTFSIIYFPLFATL 210
            ::|.||.:....:::..||            ::|.|.||||||..|..|||:.||.||||.:|.:
 Frog   522 RLQVAGEITTGPRVSALTV------------LRDLGFFGLYKGAKACFLRDIPFSAIYFPCYAHM 574

  Fly   211 -----NDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVVKTRLQAIKKADGEKEFKGIS 270
                 |:.| |.:.|       ...|||..||..||..|.|.||:|||||...:| |:..:.|:.
 Frog   575 KASFANEDG-RVSPG-------YLLLAGAIAGMPAASLVTPADVIKTRLQVAARA-GQTTYTGVI 630

  Fly   271 DCITKTLKHEGPTAFFKGGLCRMIVIAPLFGIAQTVYYL 309
            ||..|.||.||..|.:||...|:...:|.||:....|.|
 Frog   631 DCFRKILKEEGHRALWKGAGARVFRSSPQFGVTLVTYEL 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 42/78 (54%)
Mito_carr 115..213 CDD:278578 40/102 (39%)
Mito_carr 226..307 CDD:278578 33/80 (41%)
slc25a13XP_031759029.1 EF-hand_7 82..147 CDD:404394
EFh_PEF <120..253 CDD:355382
Mito_carr 396..489 CDD:395101 50/96 (52%)
Mito_carr 491..578 CDD:395101 39/98 (40%)
Mito_carr 583..675 CDD:395101 38/96 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4126
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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