DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12213 and golim4b

DIOPT Version :9

Sequence 1:NP_001097754.1 Gene:CG12213 / 41447 FlyBaseID:FBgn0260742 Length:581 Species:Drosophila melanogaster
Sequence 2:NP_001014371.2 Gene:golim4b / 541535 ZFINID:ZDB-GENE-050327-74 Length:478 Species:Danio rerio


Alignment Length:543 Identity:102/543 - (18%)
Similarity:182/543 - (33%) Gaps:164/543 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RSGRVRICILMSMFI--VLIMMIVIYQMSQHQLDESRA-------FQEGLSVQMQ---------- 53
            |..|:....|:.:|:  .|...::.|:|.: :|.::.|       .||.||.|:|          
Zfish     9 RQRRIFQSFLLVIFVCGTLCAFMISYEMHK-ELKKTEATALKYQQHQESLSAQLQVVYEHHSKLE 72

  Fly    54 --------------------------SLNAEKLTAEKRMSALRSEKMTLQEQYEGQLAEALQKQH 92
                                      :||.||..:..|:::|::|...||.|:|.     |:.|:
Zfish    73 KSLQKERLEHKKAEEDFLVFKRESQKALNKEKQDSTYRLNSLQTEHQILQSQHED-----LKMQY 132

  Fly    93 DTEHALQEKFDAQVEKYKLL----EIKYTNLEAE---FVKSKKKHIEDTNAFDQKLQKVLADLHK 150
               :.||||...|.:.::.:    .:|..||:.|   .:...|:::.:....:::|:|...|::.
Zfish   133 ---YELQEKHQNQGQDHERVLDEHRLKIDNLQREKEVEISRLKENVYNLREENRQLRKAHQDIYA 194

  Fly   151 ---DKASKEREVAAWKEKLDKLQRDGEHKIHALEATIAEFKTN-------------CNYVPKV-- 197
               |...:.:.:.|.|:.|.....|  ||...:.|.:..::.|             .|.|.||  
Zfish   195 QLLDVQEQHKNLQASKDHLSLALED--HKNAVVAAQVEGYEGNGKGFSPRGVLEIENNNVTKVAM 257

  Fly   198 -QPAEAPV--QGHQQQLNKPAEQMPTT------HHSNPAQLAHSIEKPRNEKSFDAQVQVSEGLY 253
             ||.:..:  :|     |...|:..|:      .....|:|.||:..|..               
Zfish   258 KQPRQIDIFAEG-----NGKKEERSTSKDRGGEDKGEKAELEHSLSNPEE--------------- 302

  Fly   254 RIGGGVNLLATNPKQNLTNASTNFTLKSNGDGTQEQPQLPLQPFAVSNNHSLILNSVENFQIVPK 318
                    |..||:..|:.:.              :.|...:|...:..|         |:.:  
Zfish   303 --------LGINPRNTLSQSL--------------EKQTQTEPLHTTKAH---------FEAL-- 334

  Fly   319 SVSEKQQQEEPQLSGGPVSPLSAPRKSSTQASVGSASDKKAGDAPNASVAPKVSSSGLPPLAVPP 383
                     ||.|:|..|..|...........|..|..:..|...|..:.....:.       ..
Zfish   335 ---------EPVLAGNAVQTLLGMAGQDAAKHVEDAQKQGIGKNLNTEIEANNQNE-------EE 383

  Fly   384 AKTERKLPENVAPI-PENFED---KADTKGDAVDVDNAAEDLPKNENNNRYANAVNDMEGNKNVG 444
            .:.|.:...|...| ||..|.   ..:.:.|...||:..|:.......||...|..| |..:::.
Zfish   384 DEEETEYKTNADKIRPEEDEQLVVAGNPEPDEQYVDDVEEETLDESVLNRQKRAEED-ESEEDLY 447

  Fly   445 VAPKPIEDSGAHEVKDALNEPSF 467
            .....::|....|.:...|:..|
Zfish   448 TERDGVQDHANPESETFANQEYF 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12213NP_001097754.1 CCDC158 <33..>213 CDD:292543 51/250 (20%)
golim4bNP_001014371.2 GrpE 51..>202 CDD:295646 33/158 (21%)
P-loop_NTPase <217..260 CDD:304359 9/44 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_28XWM
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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