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Protein Alignment CG3281 and Zbtb42

DIOPT Version :9

Sequence 1:	NP_650132.1	Gene:	CG3281 / 41445	FlyBaseID:	FBgn0260741	Length:	538	Species:	Drosophila melanogaster
Sequence 2:	NP_001119774.1	Gene:	Zbtb42 / 691556	RGDID:	1582758	Length:	420	Species:	Rattus norvegicus

Alignment Length:	405	Identity:	99/405 - (24%)
Similarity:	144/405 - (35%)	Gaps:	97/405 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    91 NLFEQQEVAAKPDEVHV--DVV------ELID-------------QDDVVSMAQYLSTSFAEQHV 134
            :||.:.:.|:..|.|.:  |:|      .|:|             .:||::.|.||......:..
  Rat    50 HLFYRDQPASSRDTVRLNGDIVTVPAFSRLLDFMYEGRLDLHSLPVEDVLAAASYLHMYDIVKVC 114

  Fly   135 EMEEKYGDQDCSAFTSDVGEE-PLYASEDRDDEPEDSFQLKPRPDEIENRELSRPSQLGSRLNHS 198
            :...:..|.|..  |..:|.| |..........|....|..|:         ::|..||.:..|.
  Rat   115 KGRLRKKDPDLE--TRTLGTELPGQTPHPLPSWPPAFCQATPK---------AKPPSLGVKAVHP 168

  Fly   199 ANFIYKCAVCPRVFAKSESLTRHFSQAHKLTADVAAM-KLANESCGTGLLTCEHCPRTFKRQDTL 262
                     .|:....|..::...|.|..|:...... :.|:..|   ||....|...
  Rat   169 ---------LPKFGPPSWQVSEESSGALDLSLKPGPRPEQAHPPC---LLQTSQCSSI------- 214

  Fly   263 RRHMQAFHPDAIALEPEETTDNSARKRIAKRRDCPHC-----GLSFPVSSLTIHIRRHTGD---- 318
               .|...|...|.:...:..:|:..:.|.|...|.|     ||:  |:...:|| :.||.
  Rat   215 ---QQGAQPLVKAEQDSFSEQDSSSPQSADRSPPPVCASAARGLA--VNLEPLHI-QGTGSQQLG 273

  Fly   319 ------------NPYK----CDQCEKAFPRSQDLSLHMRQHTGERPS------------ECKICS 355
                        .|.:    |..|.|.||.:..|..|:..|..||.|            .|.:||
  Rat   274 LHAEPVVDSEDLGPGRHLCICPLCCKLFPSTHALQPHLSAHFRERDSVRTRLSPEGAVPTCPLCS 338

  Fly   356 KKFISQNKLARHMRLHTGQRPYSCKMCSKSFVQSNDLKIHMRRHTGERPYQCGVCGESFVCGSHL 420
            |.|.....|.||.|.|:|::||:|..|.|||..|::|..|...||.|:|:.|..|...|.....|
  Rat   339 KTFSCTYTLKRHERTHSGEKPYTCVQCGKSFQYSHNLSRHAVVHTREKPHACRWCERRFTQSGDL 403

  Fly   421 NIHRNRKGHLIAVIP 435
            ..| .||.|...|.|
  Rat   404 YRH-VRKFHYGLVKP 417

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.