DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad87A and Pcdhb1

DIOPT Version :9

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:NP_444356.1 Gene:Pcdhb1 / 93872 MGIID:2136730 Length:818 Species:Mus musculus


Alignment Length:953 Identity:215/953 - (22%)
Similarity:374/953 - (39%) Gaps:231/953 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1009 IKLQMVEEQPVGTVLTTLQANDEDSSIGEFN------ISDND--YFAINQTSGMIYTIARLDYEV 1065
            |:..:.||...|:.:..: |.|....:|:..      :::.:  :|.:::.:|.::...:||.|.
Mouse    31 IRYSVAEEMESGSFVANV-AKDLGLEVGKLAERGARLVAEGNRLHFRLHRKTGDLFVKEKLDREA 94

  Fly  1066 V--KE----VKFQVTVSDTGVPALTATADVVVDIINLNDNDPKFSQSDYYFNVTENSPRGTVAGK 1124
            :  |.    :.|::.:::.     ..:..|.|.:.::|||.|.|...:....:.|::|.|:....
Mouse    95 LCGKSDPCVLHFEIILAEP-----LQSFRVEVRVFDINDNAPVFLNKEPLLKIPESTPLGSRFPL 154

  Fly  1125 VEAHDGDVGVFGEITYTLIGENNKYFSIDA--------YTGNVMVANSSILDREQIKELTLSVVA 1181
            ..|.|.|||:.|...|||  ..|.||.:..        |...|:   .:.||||...|:.|::.|
Mouse   155 QSAQDLDVGLNGLQNYTL--SANTYFHLHTRFRSHGPKYAELVL---DNPLDREAQPEVNLTITA 214

  Fly  1182 QDKAPAAVQKSATATIHINILDVNDNAPVFTRDVYNSTVAENAAYQPPAALLQVQAIDQDEGLYG 1246
            .|  ..:..||.||.|.:.:|||||:.|.|:|.||.:.|.||:  ...:.::.|.|.|.|||...
Mouse   215 VD--GGSPPKSGTANIRVVVLDVNDHVPQFSRLVYRAQVPENS--DNGSLVVVVTATDLDEGTNK 275

  Fly  1247 DVRYIITAGNEMGL--FKLDAQSGIVYPAQSLSGKHG-----AYELTISARDTQGSGTMESTTKA 1304
            .:.|.:....|..|  |.:|.|:|.|    .|.|...     .|::.|.|.|   .|.:.:.:|.
Mouse   276 QITYSLAENPEAVLRTFLVDPQTGEV----RLRGPLDFEMIETYDIDIQATD---GGGLSAHSKV 333

  Fly  1305 IITVLRVNRHKPEFVIPALSNATIEIPGD-IVQPDYLLLTVRAMDNDTEENGKVSYHLQVN---- 1364
            ::.|:.||.:.||..|.::|:   .:|.| .:|....|.|:|  |.|....||::..|:.:    
Mouse   334 LVEVVDVNDNPPEVTISSVSS---PLPEDSALQTVVALFTIR--DRDVRVGGKITCFLKEDLPFV 393

  Fly  1365 ----NRNEQQTGEFKIDEVTGELRAKTQLNRKNRANYDIILVARDAGNPPFESLRLLSVSIVDAN 1425
                .||..            .|.....|:|::.::|:|.|||.|.|.|...:..::.|.|.|.|
Mouse   394 VKHTFRNSY------------SLVTDRSLDREDVSSYNITLVAMDTGPPNLSTETVIEVVIADVN 446

  Fly  1426 ENRPEFPDASNPYKVSINENSGRDVKIGHIQAASRSKHNRDIFYYMLLGNEDGAFYV------DK 1484
            :|.|.|.:.|  |.:::.||:...|.||.:.|............|.||..:.|...|      :.
Mouse   447 DNSPVFQEDS--YVLTVRENNSPAVFIGKVHAEDLDLGENAQVTYSLLPPKSGDLSVFAYISINS 509

  Fly  1485 LTGDIYTNKSLDREETDVYTLYILASIKADLHISEEERASFSIKTLNRDNTVAKVAITVLDVNDN 1549
            ..|.:|..:::|.|....:...:.|:....|.:|.|                ..|.:.|||.|||
Mouse   510 DNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSE----------------VTVRVVVLDDNDN 558

  Fly  1550 PPVFEKPIYYAGVNAN------AKMGAAITLVNATDADQGKNAKIEF-MIVASNLYKFGATKSTG 1607
            .|:...|:....:..|      |:.|..:|.|.|.|.|.|:|:.:.: ::.|::|..|...:   
Mouse   559 RPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHLLKATDLGLFSVQR--- 620

  Fly  1608 SIVPSPFAISQDGRISANTIMAEYNQDRFELEIVARELEQPQSSASTKVNIWVFDGTQLVRVILS 1672
                      |:|.|.....::|.:....:|.|:.::..||..|.:..:||.:.||       .|
Mouse   621 ----------QNGEIRTLRQISERDPMMQKLVILVQDHGQPALSTTASLNILLVDG-------FS 668

  Fly  1673 RPPEEVYQEQEEIIAELRNATQHRIIVDEIRFHLDSIGRIRMDWCDLYFHAVDPQTQQIAPVDEI 1737
            .|           ..:.::.::|.                         ..|:|.|:        
Mouse   669 EP-----------YLQFQDPSKHS-------------------------RKVNPTTK-------- 689

  Fly  1738 LKDIDRNYDYLKDYYAGFAIENVVPAYIAIVQDEFDLAVAGLVALVIVLFVGVISFIVLCCCLKH 1802
                                      |:.|     .|:|   ::.:.:|.|.||..|.|...:||
Mouse   690 --------------------------YLVI-----SLSV---LSFLFLLSVTVIFIIHLYQKIKH 720

  Fly  1803 WNLSVPVETRRKEALIKKQIIEDLNTTENPLWIEQKLKLYEEQELTMQVFSEPDHISNSEAPGHL 1867
                      |.:..|::...:|.|...|.:.......|.:..         |..:.::...|:.
Mouse   721 ----------RDKFTIQEHFYDDCNFPNNLVQGRGNGSLSQPC---------PYDMCSATGTGNS 766

  Fly  1868 DHR------SSLEQVHHVGQTVDNTYATIQPRNNQNRLTGGGG 1904
            :.|      .:....|..|:......:::.|.:|:||..|..|
Mouse   767 EFRFLKRFMPNFPFPHATGEVKTEDDSSLPPGSNKNRSRGSAG 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637
Cadherin_repeat 136..240 CDD:206637
Cadherin_repeat 248..353 CDD:206637
Cadherin_repeat 362..468 CDD:206637
Cadherin_repeat 476..>533 CDD:206637
E_set <627..667 CDD:298831
CA 692..772 CDD:214520
Cadherin_repeat 778..873 CDD:206637
Cadherin_repeat 882..994 CDD:206637
Cadherin_repeat 1015..1099 CDD:206637 16/97 (16%)
Cadherin_repeat 1108..1207 CDD:206637 34/106 (32%)
Cadherin_repeat 1215..1314 CDD:206637 30/105 (29%)
Cadherin_repeat 1327..1427 CDD:206637 28/108 (26%)
Cadherin_repeat 1437..1549 CDD:206637 25/117 (21%)
Cadherin_repeat 1557..1662 CDD:206637 24/111 (22%)
Pcdhb1NP_444356.1 Cadherin_2 30..110 CDD:285466 14/79 (18%)
Cadherin_repeat 140..238 CDD:206637 34/104 (33%)
Cadherin_repeat 246..343 CDD:206637 30/105 (29%)
Cadherin_repeat 356..448 CDD:206637 28/105 (27%)
Cadherin_repeat 456..558 CDD:206637 26/119 (22%)
Cadherin_repeat 577..665 CDD:206637 23/100 (23%)
Cadherin_C_2 688..772 CDD:293101 22/144 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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