DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad87A and Pcdh15

DIOPT Version :9

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:XP_038955032.1 Gene:Pcdh15 / 690865 RGDID:1590969 Length:1940 Species:Rattus norvegicus


Alignment Length:1668 Identity:417/1668 - (25%)
Similarity:652/1668 - (39%) Gaps:426/1668 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 PPVFQGSLSTVIDEDSPINTLVLTVHARDGDTGEP-RKIVYDLRTNPNDYFLLDAQTGEL---RT 302
            ||    :....|||:|...|:::......|..|.| ..|...|:.|.:.:.|||.....|   .|
  Rat    44 PP----ATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNST 104

  Fly   303 AKPLDREALEDSTGIISLVIRARELVNGVPSDDPLTSATAKATVTIRDVNDSPPVFNHKEYSVSL 367
            .:.|||   :....|.|:|::. :.||....    |....:..:.:||.||:.|.|.|:.|..::
  Rat   105 GRVLDR---DPPMNIHSIVVQV-QCVNKKVG----TVIYHEVRIVVRDRNDNSPTFKHESYYATV 161

  Fly   368 LENTLPGTPL----ALDMSVSDADVGINSKFALRL-----DDVSG-VFDVEPKLVTGYSQVNIRV 422
            .|.|..||.:    |.|...:|.|.|.|.:....:     |..|. .|:: |.::||    |: |
  Rat   162 NELTPVGTTIFTGFAGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEI-PLMLTG----NV-V 220

  Fly   423 ANGTLDYENPNQRKFIVLVVAEE--TDTNPRLSSTATITVSVLDANDNKPVF------------E 473
            ....|:||  ::.::.|::.|.:  .:.|.|.::|.|:||.|||.:|..|:|            .
  Rat   221 LRKRLNYE--DKTRYYVIIQANDRAQNLNERRTTTTTLTVDVLDGDDLGPMFLPCVLVPNTRDCR 283

  Fly   474 QESYSASVSEAALPGQ---YIAT--ITARDVDSGSYGDS---GIRYS-LSGTGAE---LFHVNEQ 526
            ..:|.|::.|...|.:   .:.|  |.|.|.|......|   ||.|| |.||..:   ..|::.:
  Rat   284 PLTYQAAIPELRTPEELNPILVTPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPRFLHMHPR 348

  Fly   527 TGVISLANCHDNGESNRRERRDLNEDEHVEEDDGEGHLEMLSMEAATREIGTEPTVQYTLITQAP 591
            |..::|.             ..:|.|.|.:.|                                 
  Rat   349 TAELTLL-------------EPVNRDFHQKFD--------------------------------- 367

  Fly   592 EEQASSVPLPAPVPHAAPSGVPAATANDDKAPQTCLDYESETTYFLSYKATDDNGRGSASVVSLR 656
                                                         |..||..|||....:..||.
  Rat   368 ---------------------------------------------LVIKAEQDNGHPLPAFASLH 387

  Fly   657 ISVTDANDSPPVCESPLYRASVDE----GAVVFDS-----PLIVKARDADTMSRISYRIRGSEQV 712
            |.:.|.|:..|....|.|:..:.|    ||.:.:|     ||.:.|.|.|        |..::..
  Rat   388 IEILDENNQSPYFTMPSYQGYILESAPVGATISESLNLTTPLRIVALDKD--------IEDTKDP 444

  Fly   713 ESIFDIDRETGQIIIRPNA-----TL--DVTNLNSDQLIFAVEANDGLFTAH-CGVNITVRDVNN 769
            |....::..|....:.|..     ||  .|.........|.:.|.||:..:. ..|||.|.|.|:
  Rat   445 ELHLFLNDYTSVFTVTPTGITRYLTLLQPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDAND 509

  Fly   770 HVPNFEQQSYSAVVEENSEIGTSVERVHATDLDTGKNAELRYRIQQGSFDDFGIVETTGEVFVSR 834
            :.|.|.:.||:..|..:...|.||.::.|.|.|.|.|.|:.|.|..||..||.|..|||.|.::.
  Rat   510 NTPTFPEISYNVYVYTDMSPGDSVIQLTAVDADEGSNGEISYEILVGSKGDFVINRTTGLVSIAP 574

  Fly   835 KLDFDRRNTYQLQIQASDQGTPSLTGTATLTINVQNSNDKDPYFVPATQHAEVRADAPPGQLVYT 899
            .::.....||.|.:||||                                     :|||.:    
  Rat   575 GVELVVGQTYALTVQASD-------------------------------------NAPPAE---- 598

  Fly   900 LIALDPDVANHNALEFAGTDDITAIDKEGKELPHYDQFKEYFKISRNGKVSVNKQLDRNLFAVMR 964
                                                                    .|:....:.
  Rat   599 --------------------------------------------------------RRHSICTVY 607

  Fly   965 INVLVTDSTAPNVQQGRGLLIIQIIDVNKNPPRFNAPWSVEQPQI--KLQMVEEQPVGTVLTTLQ 1027
            |.||     .||               |::||||        ||:  .|::.|...:|.||..||
  Rat   608 IEVL-----PPN---------------NQSPPRF--------PQLMYSLEVSEAMRIGAVLLNLQ 644

  Fly  1028 ANDEDSSIGEFNISDND---YFAINQTSGMIYTIARLDYEVVKEVKFQVTVSDTGVPALTATADV 1089
            |.|.:.....:.|.:.|   .|.:::|:|::.....||.|........||.|| |.|..|:||.|
  Rat   645 ATDREGDPITYAIENGDPQRVFNLSETTGILSLGKALDRESTDRYILIVTASD-GRPDGTSTATV 708

  Fly  1090 VVDIINLNDNDPKFSQSDYY----FNVTENSPRGTVAGKVEAHDGDVGVFGEITYTLIGENNKYF 1150
            .:.:.::|||.|.|   |.|    .:|.|......| |:|.|.|.|.|:.|::.|:| |..|..|
  Rat   709 NIVVTDVNDNAPVF---DPYLPRNLSVVEEEANAFV-GQVRATDPDAGINGQVHYSL-GNFNNLF 768

  Fly  1151 SIDAYTGNVMVANSSILDREQIKELTLSVVAQDKAPAAVQKSATATIHINILDVNDNAPVFTRDV 1215
            .|   |.|..:..:..|:||......|.|||.|  .|...:.:|.|::|.:||::||:||||...
  Rat   769 RI---TSNGSIYTAVKLNREARDHYELVVVATD--GAVHPRHSTLTLYIKVLDIDDNSPVFTNST 828

  Fly  1216 YNSTVAENAAYQPPA--ALLQVQAIDQDEGLYGDVRYIITAGNEMGLFKLDAQSGIVYPAQSLS- 1277
            |...|.||.    ||  |.||::|.|.|.|  .:|.|.|.:.....||.|...:|.:...:||. 
  Rat   829 YTVVVEENL----PAGTAFLQIEAKDVDLG--ANVSYRIRSPEVKHLFALHPFTGELSLLRSLDY 887

  Fly  1278 ----GKHGAYELTISARDTQGSGTMESTTKAIITVLR-VNRHKPEFVIPALSNATIEIPGDIVQP 1337
                .:..:....:.|.|..  |||......:..::: :|.:.|.|        :..|...:|.|
  Rat   888 EAFPDQEASITFLVEAFDIY--GTMPPGIATVTVIVKDMNDYPPVF--------SKRIYKGMVAP 942

  Fly  1338 DYL----LLTVRAMDNDTE--ENGKVSYHLQVNNRNEQQTGEFKIDEVTGELRAKTQLNRKNRAN 1396
            |.:    :.||.|.|.|..  ...:|.|.:. :.:.......|.::|.:|.:..:..||.:....
  Rat   943 DAVKGTPITTVYAEDADPPGLPASRVRYRVD-DVQFPYPASIFDVEEDSGRVITRVNLNEEPTTI 1006

  Fly  1397 YDIILVARDAGNPPFESLRLLSVSIVDANENRPEFPDASNPYK-VSINENSGRDVKIGHIQAASR 1460
            :.:::||.|.|.|...|...:.:.::...| .|.|  ....|: ..::|.:.|...:|.|.||: 
  Rat  1007 FKLVVVAFDDGEPVMSSSATVRILVLHPGE-IPRF--TQEEYRPPPVSELAARGTVVGVISAAA- 1067

  Fly  1461 SKHNRDIFYYMLLGNEDGAFYVDKLTGDIYTNKSLDREETDVYTLYILAS----IKADLHISEEE 1521
              .|:.|.|.::.||||..|.::.:||.||.|..||.|....|.|.:.|.    :.|:|.:.   
  Rat  1068 --INQSIVYSIVAGNEDDKFGINNVTGVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVP--- 1127

  Fly  1522 RASFSIKTLNRDNTVAKVAITVLDVNDNPPVFEKPIYYAGVNANAKMGAAITLVNATDADQGKNA 1586
                     ::.|| |||.|.:.|.||:||||:|..|..||:.:|:|..::..|.|||.|.|..:
  Rat  1128 ---------SKSNT-AKVYIEIQDENDHPPVFQKKFYIGGVSEDARMFTSVLRVKATDRDTGNYS 1182

  Fly  1587 KIEFMIVASNLYK----FGATKSTGSIVPSPFAISQDGRISANTIMAEYNQDR--FELEIVAREL 1645
            .:.:.::...:.:    |.....||.|               .|.|..:|..|  |:.:::|  .
  Rat  1183 AMAYRLIIPPIKEGKEGFVVETYTGLI---------------KTAMLFHNMRRSYFKFQVIA--T 1230

  Fly  1646 EQPQSSASTKVNIWVFDGTQL-VRVILSR-PPEEVYQEQEEIIAELRNATQH-----RIIVDEI- 1702
            :......|.|.::.|....|| ::||:|. ||..|.::.|::...|....|.     :::|:.| 
  Rat  1231 DDYGKGLSGKADVLVSVVNQLDMQVIVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIG 1295

  Fly  1703 -RFHLDSIGRIRMDWCDLYFHAVDPQTQQIAPVDEILKDID-RNYDYLKD---YY--AGFAIENV 1760
             |.|.|:........|||..:|:||||.:....:|:.|.:| :..|..||   ||  .|..:|..
  Rat  1296 ARRHGDAFSLEDYSKCDLTVYAIDPQTNRAIDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIR 1360

  Fly  1761 VPAYIAIVQ---DEFDLAVAGLVALVIVLFVGVISFIVLCCCL 1800
            .|..:..::   :........|:||         :||::.||:
  Rat  1361 TPEAVTSIKKRGESLGYTEGALLAL---------AFIIILCCI 1394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637
Cadherin_repeat 136..240 CDD:206637
Cadherin_repeat 248..353 CDD:206637 27/108 (25%)
Cadherin_repeat 362..468 CDD:206637 33/117 (28%)
Cadherin_repeat 476..>533 CDD:206637 19/68 (28%)
E_set <627..667 CDD:298831 11/39 (28%)
CA 692..772 CDD:214520 20/87 (23%)
Cadherin_repeat 778..873 CDD:206637 30/94 (32%)
Cadherin_repeat 882..994 CDD:206637 10/111 (9%)
Cadherin_repeat 1015..1099 CDD:206637 27/86 (31%)
Cadherin_repeat 1108..1207 CDD:206637 33/102 (32%)
Cadherin_repeat 1215..1314 CDD:206637 28/106 (26%)
Cadherin_repeat 1327..1427 CDD:206637 22/105 (21%)
Cadherin_repeat 1437..1549 CDD:206637 36/116 (31%)
Cadherin_repeat 1557..1662 CDD:206637 24/110 (22%)
Pcdh15XP_038955032.1 ECD 36..145 CDD:408229 28/112 (25%)
Cadherin_repeat 156..245 CDD:206637 24/96 (25%)
CA 310..398 CDD:214520 29/178 (16%)
Cadherin_repeat 404..510 CDD:206637 27/113 (24%)
Cadherin_repeat 518..614 CDD:206637 37/197 (19%)
Cadherin_repeat 626..718 CDD:206637 28/92 (30%)
Cadherin_repeat 727..820 CDD:206637 32/99 (32%)
Cadherin_repeat 828..926 CDD:206637 27/105 (26%)
Cadherin_repeat 935..1032 CDD:206637 22/97 (23%)
Cadherin_repeat 1050..1145 CDD:206637 35/110 (32%)
Cadherin_repeat 1154..1248 CDD:206637 24/110 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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