DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad87A and Cdhr3

DIOPT Version :10

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:XP_063118820.1 Gene:Cdhr3 / 686932 RGDID:1591286 Length:830 Species:Rattus norvegicus


Alignment Length:869 Identity:184/869 - (21%)
Similarity:326/869 - (37%) Gaps:252/869 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   879 VPATQHAEVRADAPPGQLVYTL-----IALDPDVANHNALEFAGTDDITAIDKEGKELPHYDQ-- 936
            :|||.|  |..:|||..||:|.     ::|.|                        .:|.:..  
  Rat    24 LPATSH--VAENAPPATLVHTFSVNLSVSLSP------------------------VIPGFPMVI 62

  Fly   937 ----FKEYFKISR----------NGKVSVN-----KQLDRNLFAVMRINVLVTDSTAPNVQQGRG 982
                |.|.|:::|          .||..::     |..|..::  ::.:|.|||     ||    
  Rat    63 NPRPFTEAFRVNRLSATTFEVVTTGKEQLDFETGPKAFDLQIY--VKDDVGVTD-----VQ---- 116

  Fly   983 LLIIQIIDVNKNPPRFNAPWSVEQPQIKLQMVEEQPVGTVLTTLQANDEDSS----IGEFNISDN 1043
            :|.:|:.|||: ||:|..  |:.| .:.|.:.|....|.:......:.||:|    :..|.||.:
  Rat   117 VLTVQVTDVNE-PPQFQG--SLAQ-GLNLYITERTNPGFIYQVEAFDPEDTSRNIPLRYFLISPS 177

  Fly  1044 DYFAINQTSGMIYTIARLDYEVVKEVKFQVTVSDTGVPALTATADVVVDIINLNDNDPKFSQSDY 1108
            ..|.:: .:|.:::...||:|...: .|.:.|.......|.|:..:.|.|:|:||..|.|:....
  Rat   178 KNFRMS-ANGTLFSTTELDFEAGHK-SFHLLVGVRDSRDLEASTALQVTIVNINDEIPLFTSPRR 240

  Fly  1109 YFNVTENSPRGTVAGKVEAHD-GDVGVFGEITYTLIGENNKYFSIDAYTGNVMVANSSILDREQI 1172
            .:::.|.:|.||:...:.|.| .|.|..|.:.|: |...:.||.:|..||.:.||.....|..::
  Rat   241 VYSIPEEAPLGTMVANITAVDPDDEGFPGHLLYS-IATTSSYFMVDQLTGTIQVAQRLDRDAGEL 304

  Fly  1173 KE---LTLSVVAQDKAPAAVQKSATATIHINILDVNDNAPVFTRDVYNSTVAENAAYQPPAALLQ 1234
            ::   ::|.|:.:|: |:..|::......| :.|:|||.....:..::..:.|.||   ...|| 
  Rat   305 RQNPIISLEVLVKDR-PSGGQENRMQITFI-VEDINDNPATCRKRTFSIMLPERAA---NGTLL- 363

  Fly  1235 VQAIDQDEGLYGDVRYIITAGNEMGLFKLDAQSGIVYPAQSLSGKHGAYELTISARDTQGSGTME 1299
               :|.::..:.|                |:::           .:..:..|..:    |:|:..
  Rat   364 ---LDLNKFCFDD----------------DSEA-----------PNNKFNFTTPS----GAGSSR 394

  Fly  1300 STTKAIITVLRVNRHKPEFVIPALSNATIEIPGDIVQPDYLLLTVRAMDNDTEENGKVSYHLQVN 1364
            ..::.                ||.|...:.| ||:   ||             ||..   :|...
  Rat   395 RFSQR----------------PAGSGRIVLI-GDL---DY-------------ENPS---NLAAG 423

  Fly  1365 NRNEQQTGEFKIDEVTGELRAKTQLNRKNRANYDIILVARDAGNPPFESLRLLSVSIVDANENRP 1429
            |:                              |.:::..:|...|.::  :.:.:||:...||  
  Rat   424 NK------------------------------YSVMIQVQDVAPPYYK--KSIYISILTRPEN-- 454

  Fly  1430 EFP---DASNPYKVSINENSGRDVKIGHIQAASRSKHNRDIFYYMLLGNED----GAFYVDKLTG 1487
            |||   :.|: |...:.|......::|.::|..|....|.:.|.:..|...    ..|:::..||
  Rat   455 EFPLIFERSS-YMFDVPETRPARTQVGQVRATDRDFPQRPVVYSISRGGASLQYPNIFWINPKTG 518

  Fly  1488 DIYTNKSLDREETDVYTLYILASIKADLHISEEERASFSIKTLNRDNTVAKVAITVLDVNDNPPV 1552
            ::......|.|.|.||.|.:.|:       :.|:|:|.:            |.:.::..||..|:
  Rat   519 ELQLITKADHETTPVYILTVEAT-------NGEDRSSVT------------VTVNIVGENDEKPI 564

  Fly  1553 FEKPIYYAGVNANAKMGAAIT--LVNATDADQGKNAKIEFMIVASNLYKFGATKSTGSIVPSPFA 1615
            .....|:..:..:.|:|..|.  .:..||.|....         |..|..|:.........||.|
  Rat   565 CTPNFYFMSIPVDLKVGTNIQNFKLTCTDLDSSPR---------SFRYSIGSGNINNHFAFSPNA 620

  Fly  1616 ISQDGRISANTIMAEYNQDRFELEIV--ARE-------LEQPQSSASTKVNIWVFDGTQLVRV-I 1670
            .|...|:    ::|    .||:..|:  .|:       .:....|..||....|..||..:.| :
  Rat   621 GSNITRL----LLA----SRFDYSILDTVRDYKLLVYVTDDNLLSGRTKAKALVETGTVTLSVKV 677

  Fly  1671 LSRP--------PEEVYQEQEEII 1686
            :..|        |...||.:.|.|
  Rat   678 IPHPVTTITTPRPRITYQIRRENI 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637
Cadherin_repeat 136..240 CDD:206637
Cadherin_repeat 248..353 CDD:206637
Cadherin_repeat 362..468 CDD:206637
Cadherin_repeat 476..>533 CDD:206637
CA_like <627..667 CDD:481204
CA 692..772 CDD:214520
Cadherin_repeat 778..873 CDD:206637
Cadherin_repeat 882..994 CDD:206637 31/137 (23%)
Cadherin_repeat 1015..1099 CDD:206637 21/87 (24%)
Cadherin_repeat 1108..1207 CDD:206637 27/102 (26%)
Cadherin_repeat 1215..1314 CDD:206637 11/98 (11%)
Cadherin_repeat 1327..1427 CDD:206637 14/99 (14%)
Cadherin_repeat 1437..1549 CDD:206637 23/115 (20%)
Cadherin_repeat 1557..1662 CDD:206637 24/115 (21%)
Cdhr3XP_063118820.1 None
Blue background indicates that the domain is not in the aligned region.

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