DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad87A and Pcdh1

DIOPT Version :10

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:XP_038953281.1 Gene:Pcdh1 / 307481 RGDID:1308490 Length:1231 Species:Rattus norvegicus


Alignment Length:857 Identity:221/857 - (25%)
Similarity:345/857 - (40%) Gaps:161/857 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   580 PTVQYT--LITQAPEEQ---------ASSVPLP---------APVPHAAPSG-----VPAATAND 619
            |:..:|  ::.:.||||         |:...||         ...|:....|     ....|:.|
  Rat    45 PSASHTTQVVYKVPEEQPPNTLIGSLAADYGLPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSID 109

  Fly   620 DKAPQTCLDYESETTYFLSYKA--TDDNGRGSASVVSLRISVTDANDSPPVCESPLYRASVDEGA 682
            .:..:.|.:..|.:...|.::.  ||....||..::..:|.|.|.||:.|...||:...::.|..
  Rat   110 REGLRECQNQISGSPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENT 174

  Fly   683 VV---FDSPLIVKARDADTMSRISYRIRGSEQVESIF------DIDRETGQIIIRPNATLDVTNL 738
            .:   |..||... |||......||.::...:.:.:|      |.:.:..|:|:..|  ||....
  Rat   175 NIGSLFPIPLATD-RDAGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGN--LDRERW 236

  Fly   739 NSDQLIFAVE-------ANDGLFTAHCGVNITVRDVNNHVPNFEQQSYSAVVEENSEIGTSVERV 796
            :|..|...|:       |:..|      :.:||.|.|::.|.||:.:|.|.:.|||.||.||.:|
  Rat   237 DSYDLTIKVQDGGSPPRASSAL------LRVTVLDTNDNAPKFERPTYEAELSENSPIGHSVIQV 295

  Fly   797 HATDLDTGKNAELRYRIQQGSFDDFGIV-------ETTGEVFVSRKLDFDRRNTYQLQIQASDQG 854
            .|.|.|.|.|||:.|...|..    .:|       ..||.:.|...:|.:..:|.:..:.|.|:|
  Rat   296 KANDSDQGANAEIDYTFHQAP----EVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRG 356

  Fly   855 TPSLTGTATLTINVQNSNDKDPYF----VPATQHAEVRADAPPGQLVYTLIAL----DPDVANHN 911
            ....:..|.:.:.|::.||..|..    :....|.:..|:........|.:||    |.|...:.
  Rat   357 ANPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENA 421

  Fly   912 ALEFAGTDDITAIDKEGKELPHYDQFKEYFKISRNGKVSVNKQLDRNLFAVMRINVLVTDSTAPN 976
            |:......|:....::..|... |..|:||       :.....||........|.::..||..|.
  Rat   422 AVTCVVAGDVPFQLRQASETGS-DSKKKYF-------LQTTTPLDYEKVKDYTIEIVAVDSGNPP 478

  Fly   977 VQQGRGLLIIQIIDVNKNPPRFNAPWSVEQPQIKLQMVEEQPVGTVLTTLQANDEDSSIG----- 1036
            :.....|. :|::|||.|.|.|.      |...::...|....|.|:..:.|:|.||...     
  Rat   479 LSSTNSLR-VQVVDVNDNAPVFT------QSITEVAFPENNKPGEVVAEVTASDADSGSNAELVY 536

  Fly  1037 --EFNISDNDYFAINQTSGMIYTIARLDYEVVKEVKFQVTVSDTGVPALTATADVVVDIINLNDN 1099
              |...:....|.|:..:|.:.....||.|.....:.:|..:|.|.|:|..||.|:|::::.|||
  Rat   537 SLEPEPAAQGLFTISPENGEVRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLVNVLDCNDN 601

  Fly  1100 DPKFSQSDYYFNVTENSPRGTVAGKVEAHDGDVGVFGEITYTLIGENNKYFSIDAYTGNVMVANS 1164
            ||||..|.|.|:|.||.|..:..|.|...|||.|....:..: :.::|..|.|...||.::  :|
  Rat   602 DPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLS-VEQDNGDFVIQNGTGTIL--SS 663

  Fly  1165 SILDREQIKELTLSVVAQDKAPAAVQKSATATIHINILDVNDNAPVFTRDVYNSTVAENAAYQ-- 1227
            ...||||....|..:.|.|  .....:||...:.||:||.|||||..       |...|.:::  
  Rat   664 LSFDREQQSTYTFQLKAVD--GGVPPRSAYVGVTINVLDENDNAPFI-------TAPSNTSHRLL 719

  Fly  1228 -PPAAL----LQVQAIDQDEGLYGDVRYIITAGNEMGLFKLDAQSGIVYPAQSLSGK-HGAYELT 1286
             |...|    .||.|.|.|.|:..::.|.|..||..|||::.:.||.:...:.:..: ||.:.|.
  Rat   720 TPQTRLGETVSQVTAEDIDSGINAELTYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLV 784

  Fly  1287 ISARDTQGSGTMESTTKAIITVLRVNRHKPE---------FVIPALSNAT--------------- 1327
            :...|                     |.||.         :|...|:|.|               
  Rat   785 VKVSD---------------------RGKPPRYGTALVHLYVNETLANRTLLETLLVHSLDTPLD 828

  Fly  1328 IEIPGDIVQPDY 1339
            |:|.||   |:|
  Rat   829 IDIAGD---PEY 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637
Cadherin_repeat 136..240 CDD:206637
Cadherin_repeat 248..353 CDD:206637
Cadherin_repeat 362..468 CDD:206637
Cadherin_repeat 476..>533 CDD:206637
CA_like <627..667 CDD:481204 11/41 (27%)
CA 692..772 CDD:214520 21/92 (23%)
Cadherin_repeat 778..873 CDD:206637 30/101 (30%)
Cadherin_repeat 882..994 CDD:206637 25/115 (22%)
Cadherin_repeat 1015..1099 CDD:206637 24/90 (27%)
Cadherin_repeat 1108..1207 CDD:206637 32/98 (33%)
Cadherin_repeat 1215..1314 CDD:206637 23/106 (22%)
Cadherin_repeat 1327..1427 CDD:206637 7/28 (25%)
Cadherin_repeat 1437..1549 CDD:206637
Cadherin_repeat 1557..1662 CDD:206637
Pcdh1XP_038953281.1 Cadherin_2 52..131 CDD:462413 14/78 (18%)
Cadherin_repeat 165..269 CDD:206637 25/112 (22%)
Cadherin_repeat 277..376 CDD:206637 31/102 (30%)
Cadherin_repeat 395..495 CDD:206637 24/108 (22%)
Cadherin_repeat 505..601 CDD:206637 24/95 (25%)
Cadherin_repeat 610..704 CDD:206637 32/98 (33%)
Cadherin_repeat 723..805 CDD:206637 23/102 (23%)
Protocadherin 808..1022 CDD:462451 9/33 (27%)
Blue background indicates that the domain is not in the aligned region.

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