DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad87A and Cdhr2

DIOPT Version :10

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:NP_001414525.1 Gene:Cdhr2 / 291002 RGDID:1560576 Length:1310 Species:Rattus norvegicus


Alignment Length:1631 Identity:370/1631 - (22%)
Similarity:609/1631 - (37%) Gaps:457/1631 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LGLLMICLGLTLAKGETNLPPVFTQTLNNIILYENVTVGTVVFRLEAYDPEGSPVTYGAIG--AD 67
            |.||.:.|...:.....|..|||...:..::|.|::.||.|||.|.|.||:|..:|||..|  |:
  Rat     4 LWLLCVLLPTFMVSVTANSLPVFESNMTLVLLPEDLPVGAVVFWLVATDPDGDQLTYGISGLHAN 68

  Fly    68 HFSVDPVSGNITLIKPLDREEKDTLKFLVSIRDRVDPEGESERDNVVEVPITFIILDLNDNPPEF 132
            :|||...:|.:.|:..||.|...:.:..:|:.|..:.:...|...:||        |.|||.|.|
  Rat    69 YFSVTSNTGEVKLVSSLDFETLPSFRITISVNDGHNVQVTKEMQVIVE--------DRNDNAPVF 125

  Fly   133 QNTPYEADVNEDAAVGTTIFDKITVKDRDI----VGESLDLKCLPQQQSPEACRKFRLHIIKRDA 193
            .||.:...:.|...||:.:| .:..:|:|.    :.|....|.:|...:.:..  ||:       
  Rat   126 LNTEFSTSIKETLPVGSVVF-SVLAEDKDTGSSGLVEYFIEKVIPSTDNSKDL--FRI------- 180

  Fly   194 TILEAAVVLNDTLNYNQRMV-YHFQIEATDGPHKTQTTFEAR----------VKDVQDKPPVF-Q 246
             ::..::||||||:||.:.. |..:::|.|.......|...:          |.|..|..|.| :
  Rat   181 -LVNGSIVLNDTLSYNNKSAFYQLELKACDSGGLLNNTLVTQCSQPVFVSISVIDEPDLDPQFVR 244

  Fly   247 GSLSTVIDEDSPINTLVLTVHARDGDTGEPRKIVYDL--RTNPNDYFLLDAQTGELRTAKPLDRE 309
            ...|..:.||:.:.|.||.|.|.|.|.|....:.|::  .|.|. :|.:: :.|.:....|||||
  Rat   245 EFYSASVSEDATLGTSVLAVEAVDSDKGVNYNVTYNITNSTRPG-WFCIE-KDGVITVCGPLDRE 307

  Fly   310 ALEDSTGIISLVIRARELVNGVPSDDPLTSATAKATVTIRDVNDSPPVFNHKEYSVSLLENTL-- 372
            .|......:.:.:.|.|....:...:...|..  .|:.:.||||..|.|    |:.||...|.  
  Rat   308 QLLLDNEEVQIQVTATEEKPNIYQQEAKVSTW--VTIKVTDVNDHKPEF----YNCSLQNCTFSP 366

  Fly   373 --------------PGTPLALD---MSVSDADVGINSKFALRLDDVSG-VFDVEPKLVTGYSQVN 419
                          ....:::|   |...|.|.|.|..|.|.|:.... .|:|.|:.......|.
  Rat   367 QEAQDNFTGYVDEHASARISIDGLTMVAYDPDQGANGTFLLSLNGTDAEAFNVSPERAAVSVSVQ 431

  Fly   420 IRVANGTL-DYENPNQRKFIVLVVAEETDTNPRLSSTATITVSVLDANDNKPVFEQESYSASVSE 483
            :.|.|..: |||...:.:  |.|||  ||:.....|.||:|:.:.:.||::|||.:..|..:|.|
  Rat   432 VVVKNSEMVDYEKKTEMQ--VQVVA--TDSVSGNYSVATVTIHLRNINDHRPVFSKSLYELTVPE 492

  Fly   484 AALPGQYIAT--ITARDVDSGSYGDSGIRYS-LSGTGAELFHVNEQTGVISLANCHDNGESNRRE 545
            .: |..::.|  |.|.|:|...:|.  |.|| |.|.|.:||.|..::|.:::.|           
  Rat   493 NS-PTGFLVTDSIEATDLDGDEWGP--ITYSLLPGAGEDLFEVEPKSGNVTVKN----------- 543

  Fly   546 RRDLNEDEHVEEDDGEGHLEMLSMEAATREIGTEPTVQYTLITQAPEEQASSVPLPAPVPHAAPS 610
                                                                             
  Rat   544 ----------------------------------------------------------------- 543

  Fly   611 GVPAATANDDKAPQTCLDYESETTYFLSYKATDDNGRGSASVVSLRISVTDANDSPPVCESPLYR 675
                         .|.||.|.:..|:|:.:|||  |...::...|:|::.|.||:|||.... |.
  Rat   544 -------------GTLLDREKQAMYYLTMQATD--GGNQSTTTMLQITLLDVNDNPPVVRGS-YN 592

  Fly   676 ASV--DEGAVVFDSPLIVKARDAD----TMSRISYRIRGSEQVESIFDIDRETGQIIIRPNATLD 734
            ..|  ::|    |..:.::|.|.|    ..||:.:.:......:: |.||.:||  ::|....||
  Rat   593 IFVPEEDG----DVSVTIQAYDDDQPGTNNSRLLFSLLPGSYSQN-FSIDPDTG--LLRNLEPLD 650

  Fly   735 VTNLN---SDQLIFAVEANDGLFTAHCG---------VNITVRDVNNHVPNFEQQSYSAVVEENS 787
            ...::   ..:::..|...|      ||         |.|||.|:|:::|.|.|.||...|.|..
  Rat   651 REAIDPALEGRIVLTVHVAD------CGEPSLSTDVNVTITVEDINDNLPIFNQSSYEFFVMERV 709

  Fly   788 EIGTSVERVHATDLD-TGKNAELRYRIQQGSFDDF---GIVETTG------EVFVSRKLDFDRRN 842
            . |..|..|.|.|.| |..|..:.:.:.....::|   .||...|      .:.....||::.:.
  Rat   710 P-GALVGTVKAWDADQTAANNRISFSLSGTGANNFILQSIVLALGWAEGHLWLLPDVSLDYETQK 773

  Fly   843 TYQLQIQASDQGTPSLTGTATLTINVQNSNDKDPYFVPATQHAEVRADAPPGQLVYTLIALDPDV 907
            .:.|.:.|.:.|...|..||.:|:.|.:.||:.|                      ||     |.
  Rat   774 LFNLTVSAENPGPQGLESTANITVVVVDVNDEPP----------------------TL-----DA 811

  Fly   908 ANHNALEFAGTDDITAIDKEGKELPHYDQFKEYFKISRNGKVS--VNKQLDRNLFAVMRINVLVT 970
            .:..::..|         :.|.|               :|:|:  :.:.:|.|            
  Rat   812 VSLQSISVA---------ENGSE---------------HGQVAQVIAQDVDTN------------ 840

  Fly   971 DSTAPNVQQGRGLLIIQIIDVNKNPPRFNAPWSVEQPQIKLQMVEEQPVGTVLTTLQANDEDSSI 1035
                       .||.|:::|                               ||.|....|..|..
  Rat   841 -----------ALLRIELVD-------------------------------VLCTKAGVDVGSVC 863

  Fly  1036 -GEFNISDNDYFAINQTSGMIYTIARLDYEVVKEVKFQVTVSDTGVPALTATADVVVDIINLNDN 1099
             |.|::..|....|||:..:.|.:..|   |...|:.|...:|.|..|.::...::::|.:.|||
  Rat   864 HGWFSVDTNGSVYINQSEAIDYEVCHL---VTLVVRAQDLATDLGFDAYSSNGSLLINIKDKNDN 925

  Fly  1100 DPKFSQSDYYFNVTEN--SPRGTVAGKVEAHDGDVGVFGEITYTLI--------GENN--KYF-- 1150
            .|.|..::..|.:...  .|...|| .|:|.|.|....|.|.::::        |..|  :.|  
  Rat   926 TPYFLPNNQTFVIIPELVLPNQQVA-SVQARDEDSEDNGIIKFSILKADFVPKDGATNPVQVFRI 989

  Fly  1151 --SIDA--YTGNV-MVANSSILDREQIKELTLSVVAQDKAPAAVQKSATATIHINILDVNDNAPV 1210
              |::|  |||:: :|.|   ||........::|.|||: ||......|.|. :|:..|:.:..|
  Rat   990 SQSVEAGLYTGSIELVTN---LDSTLQGTYQVTVQAQDQ-PAMDPALETQTT-LNLFTVDQSYRV 1049

  Fly  1211 FTRDVYNSTVAENAA---YQPPAALLQ----------VQAIDQ----DEGLYGDVRYIITAGNEM 1258
               .:..||..|:..   .:..|||:|          :|.||.    ....|.|..::.:.|:.:
  Rat  1050 ---RLQFSTSREDVGANMEEIKAALIQATRTSVYVVTIQNIDSMARARVNSYMDAYFVFSNGSAL 1111

  Fly  1259 GLFKLDA-------------QSGIVYPAQSLSGKHGAYELTISARDTQGSGTMESTTKAIITVLR 1310
            .|.:|:.             |.|:|               .:|:::||.....:..|..||.:  
  Rat  1112 TLTELNVMIRKDQDALRQLLQLGLV---------------VVSSQETQEFNQTQLLTNVIIGL-- 1159

  Fly  1311 VNRHKPEFVIPALSNATIEIPGDIVQPDYLLLTVRAMDNDTEENGKVSYHLQVN-NRNEQQTGEF 1374
                    |:..:....|.|..        |:..|.           |||.::. .:..::..:.
  Rat  1160 --------VVSLVLVLVIMITA--------LVCFRK-----------SYHRKLRAMKAGKEARKT 1197

  Fly  1375 KIDEVTGELRAK-TQLNRKNRANYDIILVARDAG-------NPPFESLRLLSVSIVDANENRPEF 1431
            .|:.:|...... |.:...:|||..:.|..:|.|       :..:.||..|..:.||.:.:..||
  Rat  1198 PIETMTPAAAIPGTNVYNTDRANPMLDLPTKDLGLECHSSSDLDYHSLNSLDENSVDLDTDSKEF 1262

  Fly  1432 PDASNPYKVSINENSGRDVKIGHIQAASRSKHNRDIFYYMLLGNEDGAFYVDKLTGDIYTNKSLD 1496
            .....|:....:::......:....|.:..:..|::                     .:||..||
  Rat  1263 KRKDLPHNPPESDSEPLTAALSGRSAGTSGQQQREL---------------------SFTNPGLD 1306

  Fly  1497 REETDV 1502
              .||:
  Rat  1307 --TTDL 1310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637 32/96 (33%)
Cadherin_repeat 136..240 CDD:206637 25/118 (21%)
Cadherin_repeat 248..353 CDD:206637 28/106 (26%)
Cadherin_repeat 362..468 CDD:206637 33/126 (26%)
Cadherin_repeat 476..>533 CDD:206637 20/59 (34%)
CA_like <627..667 CDD:481204 14/39 (36%)
CA 692..772 CDD:214520 23/95 (24%)
Cadherin_repeat 778..873 CDD:206637 26/104 (25%)
Cadherin_repeat 882..994 CDD:206637 14/113 (12%)
Cadherin_repeat 1015..1099 CDD:206637 21/84 (25%)
Cadherin_repeat 1108..1207 CDD:206637 32/117 (27%)
Cadherin_repeat 1215..1314 CDD:206637 24/128 (19%)
Cadherin_repeat 1327..1427 CDD:206637 21/108 (19%)
Cadherin_repeat 1437..1549 CDD:206637 9/66 (14%)
Cadherin_repeat 1557..1662 CDD:206637
Cdhr2NP_001414525.1 None
Blue background indicates that the domain is not in the aligned region.

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