DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad87A and Pcdh17

DIOPT Version :10

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:XP_006518968.1 Gene:Pcdh17 / 219228 MGIID:2684924 Length:1185 Species:Mus musculus


Alignment Length:781 Identity:202/781 - (25%)
Similarity:326/781 - (41%) Gaps:157/781 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   703 SYRIRGSEQVESIFDIDRETG----------QIIIRPNATLDVTNLNSDQLIFAVEANDGLFTAH 757
            |||:. ......:.|:|.::|          :.:.|.||..        ||...|.|||   ...
Mouse    64 SYRVL-ENSAPHLLDVDADSGLLYTKQRIDRESLCRHNAKC--------QLSLEVFAND---KEI 116

  Fly   758 CGVNITVRDVNNHVPNFEQQSYSAVVEENSEIGTSVERVHATDLDTGKNAELRYRIQQGSFDDFG 822
            |.:.:.::|:|::.|:|........:.||:..||......|.|.|.|:|....|.:.:   ||.|
Mouse   117 CMIKVEIQDINDNAPSFPSDQIEMDISENAAPGTRFPLTSAHDPDAGENGLRTYLLTR---DDHG 178

  Fly   823 I----VETTG------EVFVSRKLDFDRRNTYQLQIQASDQGTPSLTGTATLTINVQNSNDKDPY 877
            :    |::.|      |:.:.:.||.:.:|.:.|.:.|.|.|.|..:.|..:.:.|.:|||..|.
Mouse   179 LFALDVKSRGDGTKFPELVIQKALDRELQNHHTLVLTALDGGEPPRSATVQINVKVIDSNDNSPV 243

  Fly   878 FVPATQHAEVRADAPPGQLVYTLIALDPDVANHNALEFAGTDDITAIDKEGKELPHYDQFKEYFK 942
            |...:...|:..:||.|.:|..|.|.|.|...:..:.::.:..:.            |:.:|.|.
Mouse   244 FEAPSYLVELPENAPLGTVVIDLNATDADEGPNGEVLYSFSSYVP------------DRVRELFS 296

  Fly   943 IS-RNGKVSVNKQLDRNLFAVMRINVLVTDSTAPNVQQGRGLLIIQIIDVNKNPPRFNAPWSVEQ 1006
            |. :.|.:.|...||.....::.|:|...| ..||.......:.:::||.|.|.|..... ||.|
Mouse   297 IDPKTGLIRVKGNLDYEENGMLEIDVQARD-LGPNPIPAHCKVTVKLIDRNDNAPSIGFV-SVRQ 359

  Fly  1007 PQIKLQMVEEQPVGTVLTTLQANDEDS------------------SIG-----EFNISDN-DYFA 1047
            ..:.    |..|.|||:..::..|.||                  .:|     .|.:.:| |.| 
Mouse   360 GALS----EAAPPGTVIALVRVTDRDSGKNGQLQCRVLGGGGTGGGLGGPGSVPFKLEENYDNF- 419

  Fly  1048 INQTSGMIYTIAR---LDYEVVKEVKFQVTVSDTGVPALTATADVVVDIINLNDNDPKFSQSDYY 1109
                    ||:..   ||.|...|....:...|.|.|.|.:|....|.|::.|||.|:|::..|.
Mouse   420 --------YTVVTDRPLDRETQDEYNVTIVARDGGSPPLNSTKSFAVKILDENDNPPRFTKGLYV 476

  Fly  1110 FNVTENSPRGTVAGKVEAHDGDVGVFGEITYTL----IGENN--KYFSIDAYTGNVMVANSSILD 1168
            ..|.||:..|...|.|.|.|.|:|..|.::|::    ||:.:  .|.|::...|.:....|  .:
Mouse   477 LQVHENNIPGEYLGSVLAQDPDLGQNGTVSYSILPSHIGDVSIYTYVSVNPTNGAIYALRS--FN 539

  Fly  1169 REQIKELTLSVVAQDK-APAAVQKSATATIHINILDVNDNAPVFTRDVYNSTVAENAAYQPPA-- 1230
            .||.|.....|:|:|. |||.::  :.||:.:.:|||||||||.......:..||   .|.|.  
Mouse   540 YEQTKAFEFKVLAKDSGAPAHLE--SNATVRVTVLDVNDNAPVIVLPTLQNDTAE---LQVPRNA 599

  Fly  1231 ----ALLQVQAIDQDEGLYGDVRYIITAGNEMGLFKLDAQSGIVYPAQSLSGKHGAY-------E 1284
                .:..|:|:|.|.|..|.:.|.|..||:..||::|..||      .:...|..:       |
Mouse   600 GLGYLVSTVRALDSDFGESGRLTYEIVDGNDDHLFEIDPSSG------EIRTLHPFWEDVTPVVE 658

  Fly  1285 LTISARDTQGSGTMESTTKAIIT---------VLRVN--RHKPEFVIPAL-SNATIEIPGDIVQP 1337
            |.:...| .|..|:.:..|.||.         |.|||  :|..:..:|.: :.:||.|   |:..
Mouse   659 LVVKVTD-HGKPTLSAVAKLIIRSVSGSLPEGVPRVNGEQHHWDMSLPLIVTLSTISI---ILLA 719

  Fly  1338 DYLLLTVRAMDNDTEENGKV-SYHLQVNNRNEQQTGEFKIDEVTGELRAKTQLNRKNRANYDIIL 1401
            ..:.:.|:.    ..||.:: :|:.::...:..|.|        |....|.::|:.     ||:|
Mouse   720 AMITIAVKC----KRENKEIRTYNCRIAEYSHPQLG--------GGKGKKKKINKN-----DIML 767

  Fly  1402 V 1402
            |
Mouse   768 V 768

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637
Cadherin_repeat 136..240 CDD:206637
Cadherin_repeat 248..353 CDD:206637
Cadherin_repeat 362..468 CDD:206637
Cadherin_repeat 476..>533 CDD:206637
CA_like <627..667 CDD:481204
CA 692..772 CDD:214520 18/78 (23%)
Cadherin_repeat 778..873 CDD:206637 27/104 (26%)
Cadherin_repeat 882..994 CDD:206637 25/112 (22%)
Cadherin_repeat 1015..1099 CDD:206637 27/110 (25%)
Cadherin_repeat 1108..1207 CDD:206637 34/105 (32%)
Cadherin_repeat 1215..1314 CDD:206637 32/122 (26%)
Cadherin_repeat 1327..1427 CDD:206637 17/77 (22%)
Cadherin_repeat 1437..1549 CDD:206637
Cadherin_repeat 1557..1662 CDD:206637
Pcdh17XP_006518968.1 Cadherin_2 21..113 CDD:462413 13/57 (23%)
Cadherin_repeat 142..240 CDD:206637 28/100 (28%)
Cadherin_repeat 248..348 CDD:206637 25/112 (22%)
Cadherin_repeat 362..466 CDD:206637 27/116 (23%)
Cadherin_repeat 475..577 CDD:206637 34/105 (32%)
Cadherin_repeat 592..680 CDD:206637 26/97 (27%)
Blue background indicates that the domain is not in the aligned region.

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