DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cad87A and fmi-1

DIOPT Version :10

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:NP_506256.3 Gene:fmi-1 / 179788 WormBaseID:WBGene00001475 Length:2596 Species:Caenorhabditis elegans


Alignment Length:1405 Identity:336/1405 - (23%)
Similarity:526/1405 - (37%) Gaps:422/1405 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 HFQIEATDGPHKTQTTFEARVKDVQDKPPVFQGSLSTVIDEDSPINTLVLTVHARDGDTGEPRKI 279
            |||.|                |.|::.|            ||:||.|::.:|.|... :.:|   
 Worm   164 HFQQE----------------KYVKELP------------EDTPIETIIASVKASHA-SSQP--- 196

  Fly   280 VYDLRTNPND-----YFLLDAQTGELRTAKPLDREALEDSTGIISLVIRARELVNGVPSDDPLTS 339
            :|.....|.|     .|.||..:||:|.||.:|||.|:                           
 Worm   197 LYYSMVAPQDSRSQNLFTLDTMSGEIRLAKSMDREVLD--------------------------- 234

  Fly   340 ATAKATVTIRDVNDSPPVFNHKEYSVSLLENTLPGTPLALDMSVSDADVGINSKFALRLDDVSGV 404
                                                                 |..|:       
 Worm   235 -----------------------------------------------------KHILK------- 239

  Fly   405 FDVEPKLVTGYSQVNIRVANGTLDYENPNQRKFIVLVVAEETDTNPRLSSTATITVSVLDANDNK 469
                   ||.|.:|                              :|.:|::.|:.|.|||..||.
 Worm   240 -------VTAYERV------------------------------DPTISASTTVVVHVLDVQDNS 267

  Fly   470 PVFEQESYSASVSEAALPGQYIATITARDVDSGSYGDSGIRYSL-SGTGAELFHVNEQTGVISLA 533
            |:||::||...:.|.|..|..:.::.|||:|||..|:  |.||| .|.|..|..:|.::|||.  
 Worm   268 PIFEKDSYFGEIREDAPIGTTVLSVFARDLDSGENGE--IEYSLGEGNGKNLLAINAKSGVIQ-- 328

  Fly   534 NCHDNGESNRRERRDLNEDEHVEEDDGEGHLEMLSMEAATREIGTEPTVQYTLITQAPEEQASSV 598
                                                                  |.||       
 Worm   329 ------------------------------------------------------TAAP------- 332

  Fly   599 PLPAPVPHAAPSGVPAATANDDKAPQTCLDYESETTYFLSYKATDDNGRGSASVVSLRISVTDAN 663
                                        ||.|:.:...|...|:|.......|...:.|:|.|.|
 Worm   333 ----------------------------LDRETLSLIRLDVIASDKGTPKRESTAMVEITVVDVN 369

  Fly   664 DSPPVCESPLYRASVDEGAVVFDSPLIVKARDAD--TMSRISYRIRGSEQVESIFDIDRETGQII 726
            |:.||..|..|..::.|...:......|||.|.|  |..::.|.:..|..:..: .||..||::.
 Worm   370 DNAPVFASDSYNVTILENITIPAVIATVKATDEDFGTNGKVHYSMASSSGIGGL-TIDYSTGEVT 433

  Fly   727 IRPNATLDVTNLNSDQLIFAVEANDG---LFTAHCGVNITVRDVNNHVPNFEQQSYSAVVEENSE 788
            :|..  :|..|   ..:...:.|.||   ..::...:.|.|.|:|:|.|..........:|||..
 Worm   434 LRER--IDAKN---SPITAVIRAKDGAQPALSSTVPLTINVIDINDHAPTLIAAQKMITLEENVA 493

  Fly   789 IGTSVERVHATDLDTGKNAELRYRIQQGSFDDFGIVETTGEVFVSRKLDFDRRNTYQLQIQASDQ 853
            ||..|.||:|.|.|:|.|..::|.: :|| :||.|.|.:|.:..::.||.:....|.|::.|.|.
 Worm   494 IGEEVGRVYAIDEDSGPNGIIKYSM-EGS-EDFIIDEDSGLIKTTKLLDRETTARYSLKVTARDM 556

  Fly   854 GTPSLTGTATLTINVQNSNDKDPYFVPATQHAEVRADAPPGQLVYTLIALDPDVANHNALEFAGT 918
            |||||..:.|:.:.:::.||..|.|.....:..:..:.|.|..:.||.|:|.|............
 Worm   557 GTPSLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAVDNDEDQKITYRIEEA 621

  Fly   919 DDITAIDKEGKELPHYDQFKEYFKI----SRNGKVSVNKQLDRNLFAVMRINVLVTDSTAPNVQQ 979
            |                  :|.|.|    .:...:||:.:|.|....| |:.:..||...   .|
 Worm   622 D------------------REVFSILDIGDQGAILSVSGELKRQDHKV-RVEISATDQGG---LQ 664

  Fly   980 GRGLLIIQIIDVNKNPPRFNAPWSVEQPQIKLQMVEEQPVGTVLTTLQANDEDSSIGE-----FN 1039
            ||.::.:.|.|||..|...:.|:||:.|       |..|:|..:.||:|.|.|.  |:     ::
 Worm   665 GRCVVNVFIDDVNSAPYFNDHPFSVKIP-------EHSPIGYPVITLKAEDHDR--GDNARIVYS 720

  Fly  1040 ISDNDYFAINQTSGMIYTIARLDYEVVKEVKFQVTVSDTGVPALTATADVVVDIINLNDNDPKFS 1104
            |..:.:|.|:.:||.|...:.||.|........||.||...|.|..:..:.|.:.::|||.|:|:
 Worm   721 IDSSQFFRIDPSSGDISVSSDLDREDRATFSVIVTASDHASPPLNTSTQIEVILDDINDNSPQFT 785

  Fly  1105 QSDYYFNVTENSPRGTVAGKVEAHDGDVGVFGEITYTLIGENN----KYFSIDAYTGNVMVANSS 1165
            .|.|...::|:.|.||...:|.|.|.|:|..|.:.|.|...::    :.|.:|..:|.:.|  ||
 Worm   786 SSSYAATISEDIPVGTSFLQVSAIDADIGPNGIVDYFLNESSSSPSIQLFRLDRTSGTLRV--SS 848

  Fly  1166 ILDREQIKELTLSVVAQDKAPAAVQKSATATIHINILDVNDNAPVFTRDVYNSTVAENAAYQPPA 1230
            .|||||...:.|.:.|:|:...::  ||.:.|.:.:.|||||||.|.:..|:..:|||:   |..
 Worm   849 KLDREQFAVIVLPIFARDRGTPSL--SAASEITLTLSDVNDNAPTFEQLSYDLYIAENS---PVG 908

  Fly  1231 ALL-QVQAIDQDEGLYGDVRYIITAGNEMGLFKLD---AQSGIV---------YPAQSLSGKHGA 1282
            :.: .:.|.|.|||...|:.:.|..|.:..||.::   .|:|:|         |.|::   ....
 Worm   909 STVGTIVARDADEGDNADISFRIFGGADAKLFDIEEDAEQNGVVRILTRAEFDYEAKA---NKFF 970

  Fly  1283 YELTISARDTQGSGTMESTTKAIITVLRVNRHKP---EFVIPALSNATIEIPGDIVQPDYLLLTV 1344
            :||..|      ||.:.||....|.|..||.:||   :|||  |.|..     |.||....:..:
 Worm   971 FELQAS------SGQLSSTVPVRIHVSDVNDNKPALKDFVI--LMNRF-----DNVQMARQIGFI 1022

  Fly  1345 RAMDNDTEENGKVSYHLQVNNRNEQQTGEFKIDEVTGELRAKTQLNRKNRANYDIIL--VARDAG 1407
            .|.|.|  :|..:.|.|:.|:..|       .::.||::..|.:..|    |.|:..  ...|..
 Worm  1023 PAFDPD--QNATLEYFLEENDLIE-------AEKYTGKILVKQEWKR----NMDVSFKTCVSDGA 1074

  Fly  1408 NPPFESLRLLSVSIVDANENRPEFPDASNPYKVSINENSGRDV-------------------KIG 1453
            |....:.|.:.|.:      .||:  .|..:.:|:...:..|.                   |..
 Worm  1075 NTECSTCRFIHVLV------EPEW--LSESFTLSLARMTVDDFWDPLVFQRFRDAMSTLSNWKPS 1131

  Fly  1454 HIQAASRSKHNRDIFYYMLLGNEDGAFY---------------VDKLT---GDIYTNKSLDREET 1500
            .|......:|..|:.|..:...:.|...               ::|:|   .::..::|...|..
 Worm  1132 DIHVIGVKQHLDDVIYINIAITDHGRVVRGWRAIELVKESIKKLEKMTLLQVEVIRDESCANEPC 1196

  Fly  1501 D-----VYTLYILASIKADLHISEEERASFSIKTLNRDNT 1535
            .     ..|...:..:||      .|..:|..:|||..||
 Worm  1197 SHMAKCRQTQKFVGEMKA------HETDNFIARTLNTVNT 1230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637
Cadherin_repeat 136..240 CDD:206637 6/24 (25%)
Cadherin_repeat 248..353 CDD:206637 23/109 (21%)
Cadherin_repeat 362..468 CDD:206637 13/105 (12%)
Cadherin_repeat 476..>533 CDD:206637 23/57 (40%)
CA_like <627..667 CDD:481204 12/39 (31%)
CA 692..772 CDD:214520 22/84 (26%)
Cadherin_repeat 778..873 CDD:206637 33/94 (35%)
Cadherin_repeat 882..994 CDD:206637 26/115 (23%)
Cadherin_repeat 1015..1099 CDD:206637 26/88 (30%)
Cadherin_repeat 1108..1207 CDD:206637 33/102 (32%)
Cadherin_repeat 1215..1314 CDD:206637 31/111 (28%)
Cadherin_repeat 1327..1427 CDD:206637 21/101 (21%)
Cadherin_repeat 1437..1549 CDD:206637 22/141 (16%)
Cadherin_repeat 1557..1662 CDD:206637
fmi-1NP_506256.3 Cadherin_repeat 170..266 CDD:206637 38/235 (16%)
Cadherin_repeat 274..371 CDD:206637 37/189 (20%)
Cadherin_repeat 379..475 CDD:206637 24/101 (24%)
Cadherin_repeat 486..577 CDD:206637 34/92 (37%)
Cadherin_repeat 686..780 CDD:206637 30/102 (29%)
Cadherin_repeat 788..888 CDD:206637 33/103 (32%)
Cadherin_repeat 896..996 CDD:206637 31/111 (28%)
EGF_CA 1252..1287 CDD:238011
LamG 1333..1504 CDD:238058
LamG 1582..1716 CDD:238058
EGF_CA 1774..1808 CDD:238011
EGF_Lam 1865..1911 CDD:238012
HormR 1917..1974 CDD:214468
GPS 2170..2218 CDD:197639
7tm_GPCRs 2237..2455 CDD:475119
TM helix 2 2258..2283 CDD:410628
TM helix 3 2289..2311 CDD:410628
TM helix 4 2328..2344 CDD:410628
TM helix 5 2356..2377 CDD:410628
TM helix 6 2404..2435 CDD:410628
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.