DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad87A and pcdh8

DIOPT Version :10

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:XP_002938086.2 Gene:pcdh8 / 100485587 XenbaseID:XB-GENE-484517 Length:1002 Species:Xenopus tropicalis


Alignment Length:830 Identity:215/830 - (25%)
Similarity:328/830 - (39%) Gaps:236/830 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   669 CESPLYRASVDE--GAVV--------------------FDSPLIVKARDADTMSRISYRIRGSEQ 711
            |::..||...::  |.|:                    |::.|| ..|::|....|..|      
 Frog    25 CKTVRYRTYEEDEPGTVIGTLAEDLHLEGEGTFRLMKQFNNSLI-HVRESDGQLSIGER------ 82

  Fly   712 VESIFDIDRETGQIIIR--PNAT--LDVTNLNSDQ--LIFAVEANDGLFTAHCGVNITVRDVNNH 770
                  ||||.   |.:  |:.|  |||.:|..:|  ||.              |.:.|||:|::
 Frog    83 ------IDRER---ICKQSPHCTLALDVVSLAKEQFKLIH--------------VEVEVRDINDN 124

  Fly   771 VPNFEQQSYSAVVEENSEIGTSVERVHATDLDTGKNAELRYRIQQGSFDDFGI-VETT------G 828
            .|.|........|.|::.:||.:....|||.|.|.|:...::|...|  .|.| |:|.      .
 Frog   125 SPRFPSAEIPVEVSESATVGTRIPLDIATDEDVGVNSIQSFQISVNS--HFSIDVQTRADGVKYA 187

  Fly   829 EVFVSRKLDFDRRNTYQLQIQASDQGTPSLTGTATLTINVQNSNDKDPYFVPATQHAEVRADAPP 893
            ::.:.::||.:.::.|.|::.|.|.|:||.:|||.:.:.|.:.||..|.|..:....|:..|||.
 Frog   188 DLVLMKELDRESQSAYTLELLAMDGGSPSRSGTAMVNVRVLDFNDNSPVFERSAVTVELMEDAPV 252

  Fly   894 GQLVYTLIALDPDVANHNALEFAGTDDITAIDKEGKELPHYDQFKEYFKISRNGKVSVNKQLDRN 958
            |.|:..|.|:|||                    ||.                ||::...      
 Frog   253 GYLLLDLNAVDPD--------------------EGV----------------NGEIIYG------ 275

  Fly   959 LFAVMRINVLVTDSTAPNVQQGRGLLIIQIIDVNKNPPRFNAPWSVEQPQIKLQMVEEQPVGTVL 1023
                                                       :|.:.||...|:          
 Frog   276 -------------------------------------------FSPQVPQEVRQL---------- 287

  Fly  1024 TTLQANDEDSSIGEFNISDNDYFAINQTSGMIYTIARLDYEVVKEVKFQVTVSDTGVPALTATAD 1088
                                  |.|:..||.:....::|:|..:..:|.|...|.|...|.||..
 Frog   288 ----------------------FKIDPKSGRLTLEGQVDFESKQTYEFDVQAQDMGPNPLAATCK 330

  Fly  1089 VVVDIINLNDNDP--------KFSQSDYYFNVTENSPRGTVAGKVEAHDGDVGVFGEITYTLIGE 1145
            |:|.:|::|||.|        ..|....|  :||.:.|.:....:...|.|.|..|::..||.| 
 Frog   331 VIVHVIDVNDNAPVISITPLTSISAGVAY--ITEAAARESFVALISTTDRDSGQNGQVHCTLYG- 392

  Fly  1146 NNKYFSI-DAYTGNVMVANSSILDREQIKELTLSVVAQD--KAPAAVQKSATATIHINILDVNDN 1207
             :::|.: .||..:.|:..:|.||||:|.|..|:|||:|  ..|....|..|    |.:.|.|||
 Frog   393 -HEHFRLQQAYEDSYMIVTTSALDREKISEYNLTVVAEDLGSPPFKTVKQYT----IRVSDENDN 452

  Fly  1208 APVFTRDVYNSTVAENAAYQPPAALLQVQAIDQDEGLYGDVRYIITAGNEMG-----LFKLDAQS 1267
            ||||.:.||..:|.||.|  |.|.:..|.|.|.|.|..|.|.|.:.....||     ...||..:
 Frog   453 APVFAKPVYEVSVLENNA--PGAYITTVVARDPDFGHNGKVIYRLVETEVMGAPISTYVSLDPAT 515

  Fly  1268 GIVYPAQSLSGKH---GAYELTISARDTQGSGTMESTTKAIITVLRV--NRHKPEFVIPALSNAT 1327
            |.||..::.:  |   ...:|.|.|.|   .|:.:.|:.|||.|..|  |.:.|..:.|||||.:
 Frog   516 GAVYALRTFN--HEILKQLDLRIQASD---GGSPQLTSSAIIKVKIVDQNDNAPVIIQPALSNGS 575

  Fly  1328 IEIPGDIVQPD-----YLLLTVRAMDNDTEENGKVSYHLQVNNRNEQQTGEFKIDEVTGELRAKT 1387
            .|    :|.|.     :|:..::|.|.|...|.::||.|..:.||     .|.|::||||:....
 Frog   576 AE----VVVPSRAPHGFLVTQIKAKDADEGVNAELSYSLTEDGRN-----LFTINKVTGEVFLVA 631

  Fly  1388 QLNRKNRANYDIILVARDAGNPPFESLRLLSVSIVDANENRPEFPDASNP 1437
            .::......:.:.:...|:|.||..|...::..:..|..  |..|:...|
 Frog   632 DVSEAVGHVFRVTVSVSDSGRPPLSSTATITFLVTSATP--PINPELMQP 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637
Cadherin_repeat 136..240 CDD:206637
Cadherin_repeat 248..353 CDD:206637
Cadherin_repeat 362..468 CDD:206637
Cadherin_repeat 476..>533 CDD:206637
CA_like <627..667 CDD:481204
CA 692..772 CDD:214520 23/85 (27%)
Cadherin_repeat 778..873 CDD:206637 29/101 (29%)
Cadherin_repeat 882..994 CDD:206637 15/111 (14%)
Cadherin_repeat 1015..1099 CDD:206637 17/83 (20%)
Cadherin_repeat 1108..1207 CDD:206637 33/101 (33%)
Cadherin_repeat 1215..1314 CDD:206637 36/108 (33%)
Cadherin_repeat 1327..1427 CDD:206637 25/104 (24%)
Cadherin_repeat 1437..1549 CDD:206637 1/1 (100%)
Cadherin_repeat 1557..1662 CDD:206637
pcdh8XP_002938086.2 Cadherin_2 27..102 CDD:462413 20/90 (22%)
Cadherin_repeat 132..233 CDD:206637 30/102 (29%)
Cadherin_repeat 243..341 CDD:206637 36/214 (17%)
Cadherin_repeat 357..452 CDD:206637 33/102 (32%)
Cadherin_repeat 460..562 CDD:206637 36/108 (33%)
Cadherin_repeat 577..666 CDD:206637 24/97 (25%)
Blue background indicates that the domain is not in the aligned region.

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