DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad87A and pcdh1a

DIOPT Version :10

Sequence 1:NP_731649.2 Gene:Cad87A / 41441 FlyBaseID:FBgn0037963 Length:1975 Species:Drosophila melanogaster
Sequence 2:XP_001345220.4 Gene:pcdh1a / 100006496 ZFINID:ZDB-GENE-091116-32 Length:1190 Species:Danio rerio


Alignment Length:1410 Identity:309/1410 - (21%)
Similarity:482/1410 - (34%) Gaps:503/1410 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 GSLSTVIDEDSPINTLVLTVHARDG--DTGEPRKIVYDLRTNPNDYFLLDAQTGELRTAK-PLDR 308
            |.:...:.|:.|.:||:.::.|..|  |||.    :|.|.... .|..:|.:||::.|.: |:||
Zfish    23 GGILYRVHEEQPPSTLIGSLAADQGLPDTGH----LYKLEVGA-PYLRVDGKTGDIFTTEIPIDR 82

  Fly   309 EALEDSTGIISLVIRARELVNGVPSDDPLTSATAKATVTIRDVNDSPPVFNHKEYSVSLLENTLP 373
            |.|:|..                                    |...|.|               
Zfish    83 ETLKDCR------------------------------------NKGKPCF--------------- 96

  Fly   374 GTPLALDMSVSDADVGINSKFALRLDDVSGVFDVEPKLVTGYSQVNIRVANGTLDYENPNQRKFI 438
               |..::||:|.                 :.:..|:|:.|                        
Zfish    97 ---LEFEVSVTDL-----------------IQNQSPRLIEG------------------------ 117

  Fly   439 VLVVAEETDTNPRLSSTATITVSVLDANDNKPVFEQESYSASVSEAALPGQYIATITARDVDSGS 503
                                .:.|.|.|||.|.|.....:.||.|....|...:...|.|.|:  
Zfish   118 --------------------RIEVQDINDNTPQFPSPVLTLSVPENTHMGALFSIPLATDKDT-- 160

  Fly   504 YGDSGIRYSLSGTGAELFHVNEQTGVISLANCHDNGESNRRERRDLNEDEHVEEDDGEGHLEMLS 568
                                 |:.||                                       
Zfish   161 ---------------------ERNGV--------------------------------------- 165

  Fly   569 MEAATREIGTEPTVQYTLITQAPEEQASSVPLPAPVPHAAPSGVPAATANDDKAPQT----CLDY 629
                         ..||| |..||.             .|..|:..|....:|.||.    .||.
Zfish   166 -------------ADYTL-TAGPEA-------------VALFGLQVAEDRGEKLPQLIVLGSLDR 203

  Fly   630 ESETTYFLSYKATDDNGRGSASVVSLRISVTDANDSPPVCESPLYRASVDEGAVVFDSPLIVKAR 694
            |.:.:|.|:.||.|.......|...||:.:.||||:.|..|...|.|.|.|.:.:..|.|.|||.
Zfish   204 ELKDSYDLTIKAVDGGNPPRYSSALLRVVIADANDNAPKFEKSSYEAEVAENSPIGHSVLQVKAN 268

  Fly   695 DAD--TMSRISYRI-RGSEQVESIFDIDRETGQIIIRPNATLDVTNLNSDQLIFAVEAND---GL 753
            |:|  ....|.|.: :..:.|..:..|||.:|.|.::  ..||...:|:  |.|.|.|.|   ..
Zfish   269 DSDLGPNGEIEYTLHQAIDPVPKLLRIDRSSGIIYVK--GPLDREEINN--LKFYVVARDKGPSP 329

  Fly   754 FTAHCGVNITVRDVNNHVPNFEQQSYSAV--------VEENSEIGTSVERVHATDLDTGKNA--- 807
            .::...|:|.|.|.|::.|..|.:....|        :.|:..:||:|..|..:|.|.|:||   
Zfish   330 KSSKTYVSIDVTDQNDNAPAVEIRGIGLVTHSDGVANISEDMPVGTAVALVQVSDKDEGENAVVT 394

  Fly   808 -----ELRYRIQQGSFDDFGIVETTGEVFV--SRKLDFDRRNTYQLQIQASDQGTPSLTGTATLT 865
                 ::.::::..|...   |:...:.|:  :..||::|...|:::|.|.|.|.|:|:.|.:|.
Zfish   395 CVVAGDVPFQLRPASDSS---VDNKRKYFLQTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLK 456

  Fly   866 INVQNSNDKDPYFVPATQHAEVRADAPPGQLVYTLIALDPDVANHNALEFAGTDDITAIDKEGKE 930
            :.|.::||..|.|.|.....|...:..||:.|..::|.|.|         :||            
Zfish   457 VQVTDTNDNSPIFSPTLFEVEFAEENQPGEKVVEVVASDAD---------SGT------------ 500

  Fly   931 LPHYDQFKEYFKISRNGKVSVNKQLDRNLFAVMRINVLVTDSTAPNVQQGRGLLIIQIIDVNKNP 995
                                 |.:|         :..::.||:.      |||            
Zfish   501 ---------------------NAEL---------VYSIIADSST------RGL------------ 517

  Fly   996 PRFNAPWSVEQPQIKLQMVEEQPVGTVLTTLQANDEDSSIGEFNISDNDYFAINQTSGMIYTIAR 1060
                                                              |.|:..||.:...:.
Zfish   518 --------------------------------------------------FEIDPNSGEVRARSP 532

  Fly  1061 LDYEVVKEVKFQVTVSDTGVPALTATADVVVDIINLNDNDPKFSQSDYYFNVTENSPRGTVAGKV 1125
            .|.|.....:|:||.:|.|||:...||.||:.:::.|||||||..|.|.|:|.||.|..:..|.|
Zfish   533 FDREHKDRYEFRVTAADKGVPSHRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMV 597

  Fly  1126 EAHDGDVGVFGEITYTLIGENNKYFSIDAYTGNVMVANSSI-LDREQIKELTLSVVAQDKAPAAV 1189
            ...|.|.|...::..::..:..| |.|...||.::   ||| .|||:....|..:.|.|....  
Zfish   598 TVQDMDEGENAQVQLSVEPDVGK-FVIQNGTGTIL---SSISFDREKESSYTFRLKAVDGGDP-- 656

  Fly  1190 QKSATATIHINILDVNDNAPVFTRDVYNSTVAENAAYQPPAALLQVQAIDQDEGLYGDVRYIITA 1254
            .:|:...:.||:||.||||||.|:...:|.:..:....|.:.:..|:|.|.|.|...::.|.|..
Zfish   657 PRSSYVGVTINVLDENDNAPVVTKPSNSSFIRLSPMAAPDSVVEVVEAEDIDSGSNAELVYSIAG 721

  Fly  1255 GNEMGLFKLDAQSGIVYPAQSLSGKH-GAYELTISARDTQGSGTMESTTKAII----TVLRVNRH 1314
            ||...||.:...:|.:...:.|:.|| |.:.|.|...| :|..:..:.....|    |:..|: |
Zfish   722 GNPHDLFYISPSNGEITLTKELTRKHSGLHRLVIKVSD-RGKPSRHAIALVHIYVNETIANVS-H 784

  Fly  1315 KPEFVIPAL-SNATIEIPGDIVQPDYLLLTVRAMDNDTEEN----------GKVS---------Y 1359
            ....|..:| :...::|.||   |||.|...|:       |          |.|:         :
Zfish   785 VEALVGHSLYTPLDMDIAGD---PDYGLAAQRS-------NIVYGSLAGVAGVVTVIVVVVFIRH 839

  Fly  1360 HLQVNNRNEQQTGEFKIDEVTGELRA-----KTQLNRKNRANYDIILVARDAGNPP--------F 1411
            .||...::..|.|:    :.|.:|.|     |:...||.:           .|.||        .
Zfish   840 RLQRETKSGYQAGK----KETKDLYAPKQGPKSGKGRKGK-----------KGKPPKSPKPLGED 889

  Fly  1412 ESLRL---LSVSIVDANEN---------RPEFPDASNPYKVSINENSGRDVKIGHIQAASRS--- 1461
            |.:.|   |..::...|::         .|..||....|:      |...:....:||.|.|   
Zfish   890 EEVSLQKSLKFNLDGVNDSPRIHLPLTYPPGSPDLGRHYR------SNSPLPSIQLQAQSPSASQ 948

  Fly  1462 KH---------NRDIFYYMLLGNEDGAFYVDKLTGDIYTNKSLDREETDVYTLYILASIKADLHI 1517
            ||         |.    ::..|.:|.:      ||            :|.|:.|   |.|.:   
Zfish   949 KHQAVQELPAANT----FVGTGGDDNS------TG------------SDQYSDY---SYKTN--- 985

  Fly  1518 SEEERASFSIKTLNRDNTVAKVAITVLDVNDNPPVFEKPIYYAGV 1562
                :..:|.|||.........|..:.|..|:.   ::..|.:|:
Zfish   986 ----QPKYSTKTLPHRRVTFSTANPMQDQQDSS---QQSYYDSGL 1023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad87ANP_731649.2 Cadherin_repeat 33..128 CDD:206637
Cadherin_repeat 136..240 CDD:206637
Cadherin_repeat 248..353 CDD:206637 22/107 (21%)
Cadherin_repeat 362..468 CDD:206637 10/105 (10%)
Cadherin_repeat 476..>533 CDD:206637 10/56 (18%)
CA_like <627..667 CDD:481204 15/39 (38%)
CA 692..772 CDD:214520 25/85 (29%)
Cadherin_repeat 778..873 CDD:206637 27/112 (24%)
Cadherin_repeat 882..994 CDD:206637 16/111 (14%)
Cadherin_repeat 1015..1099 CDD:206637 18/83 (22%)
Cadherin_repeat 1108..1207 CDD:206637 31/99 (31%)
Cadherin_repeat 1215..1314 CDD:206637 25/103 (24%)
Cadherin_repeat 1327..1427 CDD:206637 28/134 (21%)
Cadherin_repeat 1437..1549 CDD:206637 24/123 (20%)
Cadherin_repeat 1557..1662 CDD:206637 2/6 (33%)
pcdh1aXP_001345220.4 Cadherin_repeat 27..127 CDD:206637 35/219 (16%)
Cadherin_repeat 135..239 CDD:206637 36/192 (19%)
Cadherin_repeat 247..346 CDD:206637 32/102 (31%)
Cadherin_repeat 364..465 CDD:206637 27/103 (26%)
Cadherin_repeat 474..571 CDD:206637 34/215 (16%)
Cadherin_repeat 580..674 CDD:206637 31/99 (31%)
Cadherin_repeat 693..775 CDD:206637 22/82 (27%)
Protocadherin 778..989 CDD:462451 54/274 (20%)
Blue background indicates that the domain is not in the aligned region.

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