DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6959 and Rtn4rl2

DIOPT Version :10

Sequence 1:NP_650122.1 Gene:CG6959 / 41434 FlyBaseID:FBgn0037956 Length:425 Species:Drosophila melanogaster
Sequence 2:XP_006499655.1 Gene:Rtn4rl2 / 269295 MGIID:2669796 Length:480 Species:Mus musculus


Alignment Length:288 Identity:85/288 - (29%)
Similarity:116/288 - (40%) Gaps:47/288 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SCGPNFPAACSCGQEMYESEMQYVVNCTNAGLVNTSVLEFMPEQVEVLIFTGNRITELPWNVFGS 90
            |..|:.|..|:|    |.|.........|...|..|    :|...:.|....|.|..|....|| 
Mouse    86 SVTPSCPMLCTC----YSSPPTVSCQANNFSSVPLS----LPPSTQRLFLQNNLIRSLRPGTFG- 141

  Fly    91 INNYKQLRIVDMSSNHIREIRGKSYHHVPRVERLILNHNNLSISRYEDEVNHHHPRVFSNFINLQ 155
                ..|..:.:.||::..|...::.|:..:|.|.|..|.        .:....|..|.....||
Mouse   142 ----PNLLTLWLFSNNLSTIHPGTFRHLQALEELDLGDNR--------HLRSLEPDTFQGLERLQ 194

  Fly   156 SLHLTDAFEDNSSPQLSEDLHDIFVNSQLVKLQKLHLEQNEITHFKDRNVFCDLPSLRDLHLGDN 220
            ||||...       |||....:||  ..||.||.|:|::|.:.|.:| ::|.||.:|..|.|..|
Mouse   195 SLHLYRC-------QLSSLPGNIF--RGLVSLQYLYLQENSLLHLQD-DLFADLANLSHLFLHGN 249

  Fly   221 DLRDLNFEV-RCLNNLRFLDLERNKF------SFVKPTDLRVL----NELEERPNRT-ANL---- 269
            .||.|...| |.|.:|..|.|..|:.      :|...:.|.:|    |.|...|... |:|    
Mouse   250 RLRLLTEHVFRGLGSLDRLLLHGNRLQGVHRAAFHGLSRLTILYLFNNSLASLPGEALADLPALE 314

  Fly   270 IVDFNLNPFGCDCRTAPFRAWITTTRVT 297
            .:..|.||:.||||..|..||....||:
Mouse   315 FLRLNANPWACDCRARPLWAWFQRARVS 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6959NP_650122.1 LRR <69..>278 CDD:443914 64/224 (29%)
leucine-rich repeat 70..96 CDD:275380 6/25 (24%)
leucine-rich repeat 97..120 CDD:275380 5/22 (23%)
leucine-rich repeat 121..153 CDD:275380 6/31 (19%)
leucine-rich repeat 154..186 CDD:275380 12/31 (39%)
leucine-rich repeat 187..211 CDD:275380 10/23 (43%)
leucine-rich repeat 212..234 CDD:275380 10/22 (45%)
leucine-rich repeat 235..258 CDD:275380 7/32 (22%)
LRRCT 276..328 CDD:214507 11/22 (50%)
Rtn4rl2XP_006499655.1 LRR <115..>321 CDD:443914 65/232 (28%)
leucine-rich repeat 122..143 CDD:275380 6/25 (24%)
leucine-rich repeat 144..167 CDD:275380 5/22 (23%)
leucine-rich repeat 168..192 CDD:275380 6/31 (19%)
leucine-rich repeat 193..216 CDD:275380 12/31 (39%)
leucine-rich repeat 217..240 CDD:275380 10/23 (43%)
leucine-rich repeat 241..264 CDD:275380 10/22 (45%)
leucine-rich repeat 265..288 CDD:275380 5/22 (23%)
leucine-rich repeat 289..312 CDD:275380 7/22 (32%)
LRRCT 321..371 CDD:214507 11/22 (50%)
PHA03247 349..>429 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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