DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment glo and Esrp2

DIOPT Version :9

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_789808.1 Gene:Esrp2 / 77411 MGIID:1924661 Length:717 Species:Mus musculus


Alignment Length:570 Identity:113/570 - (19%)
Similarity:177/570 - (31%) Gaps:253/570 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 NGDNFNDDSNQQQDEDDQYNEDGGGKIENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSA 79
            ||..|:.....:|    :| |.|.....:|.::...||.|||||.::.:::..|.:.:|:..|..
Mouse   218 NGQLFSKPEVVKQ----KY-ETGPCSKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGV 277

  Fly    80 GIHLVTSRVDGKNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGT 144
            .:.|   ...|:..|||.:.....|..:.|.:.:|..||.|||||:.||.:|    ..||:| ||
Mouse   278 ALCL---NAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEE----FVKIAG-GT 334

  Fly   145 AF------------VVKLRGLPYAVTEQQIEEFFS-GLDIKTDREGILFVMDRRGRATGEAFVQF 196
            :.            :::|||||::.....:..|.. ...:....:|:|||....||.||:||..|
Mouse   335 SLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALF 399

  Fly   197 ESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRATGAGGGVGGRPGPYDIRDRGANRGGNDFGG 261
            ..::..:.||.|::..:|.||||:|||:.||:::.                    .||       
Mouse   400 ACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQV--------------------LNR------- 437

  Fly   262 GRNDWGNNGNFGVGANNMLGFNNLPSLMNSGNFGNNQGGNNGNFGNNSGPSNFGNFGGGNNGGNS 326
                        ..|:.:|.....|.|                      |..|            
Mouse   438 ------------YAASPLLPTLTAPLL----------------------PIPF------------ 456

  Fly   327 GNFGNDSGNSGNFGNFGNNGGGNFGGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGF 391
                                                                             
Mouse   457 ----------------------------------------------------------------- 456

  Fly   392 NNGGNFVSSSGVGNFGPIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFNNGSNFG 456
                                                                             
Mouse   457 ----------------------------------------------------------------- 456

  Fly   457 GGNSMGGGGNFGPIGGGRGNDIEYYTIHMRGLPYTSFENDVFKFF----EPIRPANVRINYNKKG 517
                        |:.||.|.|    .:.:||||||:...|:..|.    ..|||..|.:..|::|
Mouse   457 ------------PLAGGTGRD----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQG 505

  Fly   518 LHSGTADAYFDTYEDSQVAMKR-HREQMGSRYIELF---YDGKTRGLNGG 563
            ..||.|.....:.|.:..|.:| |::.|..||:|:.   .:..:|.|.||
Mouse   506 RPSGDAFIQMMSVERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGG 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_SF 51..125 CDD:302621 24/73 (33%)
RRM2_hnRNPH_like 146..224 CDD:240948 27/90 (30%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:240950 25/81 (31%)
Esrp2NP_789808.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
DnaQ_like_exo <82..214 CDD:299142
RRM1_ESRPs_Fusilli 248..322 CDD:240951 25/76 (33%)
RRM_SF 332..438 CDD:302621 35/145 (24%)
RRM3_ESRP1_ESRP2 464..544 CDD:241186 26/83 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845682
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.800

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