DRSC/TRiP Functional Genomics Resources

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Protein Alignment glo and Hnrnpf

DIOPT Version :9

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001032362.1 Gene:Hnrnpf / 64200 RGDID:620366 Length:415 Species:Rattus norvegicus


Alignment Length:581 Identity:160/581 - (27%)
Similarity:230/581 - (39%) Gaps:205/581 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 EDGGGKIENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVE 99
            |.|.|.:         |:|||||||.:.:::.:||.:..:.:|.||:|.:.:| :|:.:|||:||
  Rat     6 EGGEGYV---------VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVE 60

  Fly   100 VASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTA-----FVVKLRGLPYAVTE 159
            :.|::||:.|.|.::.||||||||||.:...| .:.:.|.||..:|     ..|:|||||:..|:
  Rat    61 LESEDDVKLALKKDRESMGHRYIEVFKSHRTE-MDWVLKHSGPNSADSANDGFVRLRGLPFGCTK 124

  Fly   160 QQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 224
            ::|.:|||||:|..:  ||...:|..|:.||||||||.||:..|:|||:::|:|||||||:|:||
  Rat   125 EEIVQFFSGLEIVPN--GITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187

  Fly   225 IAEMKRATGAGGGVGG--RPGPYDIRDRGANRGGNDFGGGRNDWGNNGNFGVGANNMLGFNNLPS 287
            ..|::..:........  |||||| |...|.|                  .:|.....|.:.   
  Rat   188 QEEVRSYSDPPLKFMSVQRPGPYD-RPGTARR------------------YIGIVKQAGLDR--- 230

  Fly   288 LMNSGNFGNNQGGNNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGN--SGNFGNFGNNGGGNF 350
             |.||.:....||.....|.:.|           .|..:..||.|...  ||.:.:         
  Rat   231 -MRSGAYSAGYGGYEEYSGLSDG-----------YGFTTDLFGRDLSYCLSGMYDH--------- 274

  Fly   351 GGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSSSGVGNFGPIGGGRNN 415
                                                                             
  Rat   275 ----------------------------------------------------------------- 274

  Fly   416 NNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFNNGSNFGGGNSMGGGGNFGPIGGGRGNDIEY 480
               .:|:|.|       .|.|..|                                         
  Rat   275 ---RYGDSEF-------TVQSTTG----------------------------------------- 288

  Fly   481 YTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHREQMG 545
            :.:|||||||.:.|||::.||.|:.|..|.|.....|..:|.||..|.|:|::..||.:.|..|.
  Rat   289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQ 353

  Fly   546 SRYIELFYDGKTRGLNGG------------------------EHGGGNGGGGMGNNGGGNF 582
            .||||||.:..|...||.                        ...|..|.|..|.|..|.:
  Rat   354 HRYIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGY 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_SF 51..125 CDD:302621 34/73 (47%)
RRM2_hnRNPH_like 146..224 CDD:240948 41/77 (53%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:240950 33/73 (45%)
HnrnpfNP_001032362.1 RRM1_hnRNPH_hnRNPH2_hnRNPF 10..88 CDD:410128 37/87 (43%)
Interaction with RNA. /evidence=ECO:0000250 81..86 4/4 (100%)
RRM2_hnRNPH_hnRNPH2_hnRNPF 103..192 CDD:410130 45/90 (50%)
Interaction with RNA. /evidence=ECO:0000250 179..184 4/4 (100%)
zf-RNPHF 255..290 CDD:369688 11/159 (7%)
RRM3_hnRNPH_CRSF1_like 289..363 CDD:409929 33/73 (45%)
Interaction with RNA. /evidence=ECO:0000250 355..360 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349096
Domainoid 1 1.000 78 1.000 Domainoid score I8550
eggNOG 1 0.900 - - E1_KOG4211
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 241 1.000 Inparanoid score I3250
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 1 1.000 - - FOG0000855
OrthoInspector 1 1.000 - - otm46264
orthoMCL 1 0.900 - - OOG6_102542
Panther 1 1.100 - - O PTHR13976
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X436
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.800

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