DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment glo and grsf1

DIOPT Version :9

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_005165391.1 Gene:grsf1 / 563249 ZFINID:ZDB-GENE-060825-196 Length:403 Species:Danio rerio


Alignment Length:537 Identity:123/537 - (22%)
Similarity:192/537 - (35%) Gaps:238/537 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 NQQQDEDDQY---NEDGGGKIENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVT 85
            ::...:||:|   .|...|..||..:....|:.:|||||.|.::|:.|.....:..|..|:|::.
Zfish    87 SEAPSKDDEYPPLPEYTPGSEENQAKELFIVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILY 151

  Fly    86 SRVDGKNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGH--GTAFVV 148
            ::. ||.:|:|::|:..:|||.:|...::..:..|:|||...|.|:| ||:.|.|..  .|..||
Zfish   152 NKY-GKPSGQAFIELEHEEDVGKALDQHRHYLRDRFIEVREVTNKDA-EAILKASKERVETDTVV 214

  Fly   149 KLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKI 213
            :||||||:.||..|..||||||:..|  |:..:::|||:::|:|||:|.::...|:||.::||.:
Zfish   215 RLRGLPYSCTEGDIIRFFSGLDVVED--GVTIILNRRGKSSGDAFVEFATKAMAEKALKKDREIL 277

  Fly   214 GHRYIEIF---RSSIAEMKRATGAGGGVGGRPGPYDIRDRGANRGGNDFGGGRNDWGNNGNFGVG 275
            |:||||||   :|:|....|:                                  |.|:..|...
Zfish   278 GNRYIEIFPAMKSAIPSQNRS----------------------------------WQNDRVFTPR 308

  Fly   276 ANNMLGFNNLPSLMNSGNFGNNQGGNNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNFG 340
            |.:       |.|.|:                                                 
Zfish   309 AED-------PPLRNT------------------------------------------------- 317

  Fly   341 NFGNNGGGNFGGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSSSGVGN 405
                                                                             
Zfish   318 ----------------------------------------------------------------- 317

  Fly   406 FGPIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFNNGSNFGGGNSMGGGGNFGPI 470
                                       .|..|                                 
Zfish   318 ---------------------------TVTKN--------------------------------- 322

  Fly   471 GGGRGNDIEYYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQV 535
                       .|||||||:.:...|:.|||.|:|...|.:.:..:|..:|.|:|||.|:||:.:
Zfish   323 -----------VIHMRGLPFDAKAEDIVKFFAPVRLMKVVVEFGPEGKPTGEAEAYFKTHEDAVL 376

  Fly   536 AMKRHREQMGSRYIELF 552
            ||.:.||.:..|||||:
Zfish   377 AMSKDREFIMERYIELY 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_SF 51..125 CDD:302621 24/73 (33%)
RRM2_hnRNPH_like 146..224 CDD:240948 39/80 (49%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:240950 32/72 (44%)
grsf1XP_005165391.1 RRM 106..403 CDD:223796 118/518 (23%)
RRM1_GRSF1 114..192 CDD:241174 25/78 (32%)
RRM2_GRSF1 211..285 CDD:240949 37/75 (49%)
RRM_SF 324..396 CDD:302621 32/70 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590303
Domainoid 1 1.000 78 1.000 Domainoid score I8693
eggNOG 1 0.900 - - E1_KOG4211
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 208 1.000 Inparanoid score I3674
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 1 1.000 - - FOG0000855
OrthoInspector 1 1.000 - - otm25364
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13976
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X436
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.900

Return to query results.
Submit another query.