DRSC/TRiP Functional Genomics Resources

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Protein Alignment glo and Hnrnph2

DIOPT Version :9

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001300645.1 Gene:Hnrnph2 / 56258 MGIID:1201779 Length:449 Species:Mus musculus


Alignment Length:571 Identity:163/571 - (28%)
Similarity:249/571 - (43%) Gaps:202/571 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEARKLNKA 115
            |::||||||.:.:|::.|..:..:.||::|:..:.:| :|:.:|||:||:.|:::|:.|.|.::.
Mouse    13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTR-EGRPSGEAFVELESEDEVKLALKKDRE 76

  Fly   116 SMGHRYIEVFTATPKEAKEAMRKISGHG--TA--FVVKLRGLPYAVTEQQIEEFFSGLDIKTDRE 176
            :|||||:|||.:...|....::....:.  ||  ..|:|||||:..::::|.:|||||:|..:  
Mouse    77 TMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN-- 139

  Fly   177 GILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEM--------KRATG 233
            |:...:|.:||:||||||||.||:..|:||.:::|:|||||||||:||.||:        |..|.
Mouse   140 GMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMTM 204

  Fly   234 AGGGVGGRPGPYDIRDRGANRGGNDFGGGRNDWGNNGNFGVGANNMLGFNNLPSLMNSGNFGNNQ 298
            .      ||||||  ..||.||.|..|.|                 .||..    |..|.:|...
Mouse   205 Q------RPGPYD--RPGAGRGYNSIGRG-----------------AGFER----MRRGAYGGGY 240

  Fly   299 GGNNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNFGNFGNNGGGNFGGNNNGGGGFNSG 363
            ||             :.::||.|:|   ..||:|        .||.:....|.|.::        
Mouse   241 GG-------------YDDYGGYNDG---YGFGSD--------RFGRDLNYCFSGMSD-------- 273

  Fly   364 NNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSSSGVGNFGPIGGGRNNNNGNFGNSGFGNF 428
                     :.:|:.|.|               |.|::|                          
Mouse   274 ---------HRYGDGGSS---------------FQSTTG-------------------------- 288

  Fly   429 GGNNNVGSNFGGGNNGGGGGFNNGSNFGGGNSMGGGGNFGPIGGGRGNDIEYYTIHMRGLPYTSF 493
                                                                :.:|||||||.:.
Mouse   289 ----------------------------------------------------HCVHMRGLPYRAT 301

  Fly   494 ENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHREQMGSRYIELFYDGKTR 558
            |||::.||.|:.|..|.|.....|..:|.||..|.|:||:..||.:.:..|..||:|||.: .|.
Mouse   302 ENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN-STA 365

  Fly   559 GLNGGEH------------GGGNGG-------GGMG----NNGGGNFSRRI 586
            |.:||.:            .|.:||       ||||    ::.||..|:::
Mouse   366 GTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQL 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_SF 51..125 CDD:302621 29/73 (40%)
RRM2_hnRNPH_like 146..224 CDD:240948 40/77 (52%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:240950 32/73 (44%)
Hnrnph2NP_001300645.1 RRM1_hnRNPH_hnRNPH2_hnRNPF 10..88 CDD:410128 31/75 (41%)
RRM2_hnRNPH_hnRNPH2_hnRNPF 103..192 CDD:410130 46/90 (51%)
2 X 16 AA Gly-rich approximate repeats 234..433 67/318 (21%)
zf-RNPHF 257..290 CDD:369688 11/150 (7%)
RRM3_hnRNPH_hnRNPH2_hnRNPF 289..364 CDD:410133 32/75 (43%)
2 X 19 AA perfect repeats 354..392 12/38 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 78 1.000 Domainoid score I8739
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 241 1.000 Inparanoid score I3318
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 1 1.000 - - FOG0000855
OrthoInspector 1 1.000 - - otm44174
orthoMCL 1 0.900 - - OOG6_102542
Panther 1 1.100 - - O PTHR13976
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4231
SonicParanoid 1 1.000 - - X436
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.000

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