DRSC/TRiP Functional Genomics Resources

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Protein Alignment glo and rbm12bb

DIOPT Version :9

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001277069.1 Gene:rbm12bb / 334496 ZFINID:ZDB-GENE-030131-6428 Length:685 Species:Danio rerio


Alignment Length:625 Identity:122/625 - (19%)
Similarity:208/625 - (33%) Gaps:206/625 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 GESPK----FVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQED 105
            |::|:    :::|.|:|:|||...:.:|...:.|.:     .|......|..:|.:.|...::||
Zfish   148 GDAPERAEVYLKLTGMPFSATKDNVHNFFAGLKVDD-----ILFLKNPRGMFSGNSMVRFTTKED 207

  Fly   106 VEEARKLNKASMGHRYIEVFTATPKE-AKEA-------MRK------------ISGHGTA----- 145
            ..|..|.::..||.|||::...|.:| .||.       |||            ||....:     
Zfish   208 AIEGLKRDRQYMGSRYIQITRCTEEEWLKEGGLIVAADMRKRTPVERVRSRSPISYRSRSRSPSH 272

  Fly   146 --FVVKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGR 208
              :.:....||..|.::.:..|...:.:|.|:  |:....::...:..|.|.|.|..|....|..
Zfish   273 EEYCIMFENLPPLVEKRDVRVFLQPVALKDDQ--IIIFSSKKDDKSKSAVVVFRSLTDYCAGLAH 335

  Fly   209 NREKIGHRYIEIFRSSIAEMKRAT-------GAGGGVGGRPG----------------------- 243
            |:|.:.::.:.:  |.|::.|..|       ..|...|.|..                       
Zfish   336 NKEMMYNKVVYV--SPISKEKMVTMLESSIDARGEEKGSRRSAEASQSQRNTPDSQLRCLYVRNL 398

  Fly   244 PYDIR-----------------------DRGANRG--------------GNDFGGGRNDWGNNGN 271
            |:|:|                       :|||..|              |...         ||.
Zfish   399 PFDVRKVEIMDFFHGYALTEDRVILLRDERGAGLGEALVIFQTEKEAMTGQSL---------NGQ 454

  Fly   272 FGVGANNMLGFNNLPSLMNSGNFGNNQGGNNGNFGNNSGP------SNFGNFGGGNNGGNSGNFG 330
            ..:|:..||....:..:              ..||.|..|      .||......:......||.
Zfish   455 RFLGSEVMLKCITMSQM--------------AQFGVNDQPMVSPQERNFQERNFQDRNFQDRNFQ 505

  Fly   331 NDSGNSGNF--GNFGNNGGGNFGGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNN 393
            :.:....||  .||...   ||...|.....|.. .||..    .||..|          ..||:
Zfish   506 DRNFQERNFQERNFQER---NFQDRNFQDRNFQD-RNFEE----RNFQRN----------EVFND 552

  Fly   394 GGNFVSSS-GVGNFGPIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFNNGSNFGG 457
            |..|:::. ..|:|..:   .|.:.|         :||:.:...|||.                 
Zfish   553 GPGFINNQMPQGDFEML---PNMHQG---------YGGHEHFEPNFGP----------------- 588

  Fly   458 GNSMGGGGNFGPIGGGRGN----DIEY---YTIHMRGLPYTSFENDVFKFFEPIR--PANVRINY 513
                      ||.|.||.:    |.::   ..:.:..||......:::.|....|  |.:..:.:
Zfish   589 ----------GPDGNGRQHYEPPDAQFDAPTCVKLVNLPSQIRIEEIYDFCYGYRVIPGSASLLF 643

  Fly   514 NKKGLHSGTADAYFDTYEDSQVAMKR-HREQMGSRYIELF 552
            ::.|....:|...||.:.::.||::. :...:|:|.|::|
Zfish   644 DRNGAPKRSATIAFDNHREALVAVRELNGRPIGTRKIQVF 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_SF 51..125 CDD:302621 21/73 (29%)
RRM2_hnRNPH_like 146..224 CDD:240948 15/77 (19%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:240950 15/75 (20%)
rbm12bbNP_001277069.1 RRM1_RBM12B 2..80 CDD:241188
RRM2_RBM12B 157..234 CDD:241190 22/81 (27%)
RRM_SF 275..355 CDD:302621 17/83 (20%)
RRM <352..559 CDD:223796 43/247 (17%)
RRM_SF 391..466 CDD:302621 13/83 (16%)
RRM 521..>682 CDD:223796 42/217 (19%)
RRM5_RBM12_like 609..683 CDD:240959 14/73 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590317
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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