DRSC/TRiP Functional Genomics Resources

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Protein Alignment glo and Grsf1

DIOPT Version :10

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_848815.2 Gene:Grsf1 / 231413 MGIID:106479 Length:479 Species:Mus musculus


Alignment Length:545 Identity:126/545 - (23%)
Similarity:193/545 - (35%) Gaps:231/545 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 GGKIENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVAS 102
            |.::::|    ..:|.:|||||.|.:::|:|..:..:.|...|||.:.:| |||..|:|.:|:.|
Mouse   142 GDEVDDV----YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNR-DGKRRGDALIEMES 201

  Fly   103 QEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTAF----VVKLRGLPYAVTEQQIE 163
            ::||::|.:.::..||.||:||:....::....|:.:....:..    ||:||||||:..|:.|.
Mouse   202 EQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIV 266

  Fly   164 EFFSGLDIKTDREGILFVMDRRG-RATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAE 227
            :||:||:|    ..|.||||.|| |.||||:||||..:...|||.::||:||:||||||.|...|
Mouse   267 DFFAGLNI----VDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE 327

  Fly   228 MKRATGAGGG---VGGRPGPY---------------DIRDRGANRGGNDFGGGRNDWGNNGNFGV 274
            ::...|:..|   ....|..|               |||...|.....:.               
Mouse   328 VRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEI--------------- 377

  Fly   275 GANNMLGFNNLPSLMNSGNFGNNQGGNNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNF 339
                     .||..|:.                                                
Mouse   378 ---------ELPKEMSE------------------------------------------------ 385

  Fly   340 GNFGNNGGGNFGGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSSSGVG 404
                                       ..|..| :||.....:|                     
Mouse   386 ---------------------------KLPEAV-DFGTLPSLHF--------------------- 401

  Fly   405 NFGPIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFNNGSNFGGGNSMGGGGNFGP 469
                                                                             
Mouse   402 ----------------------------------------------------------------- 401

  Fly   470 IGGGRGNDIEYYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQ 534
                         :||||||:.:...|:..||.|::|..:.:.|:..|..:|.||.:|||:||:.
Mouse   402 -------------VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAV 453

  Fly   535 VAMKRHREQMGSRYIELFYDGKTRG 559
            .||.:.|..:..||||||.:...:|
Mouse   454 AAMLKDRSHVQHRYIELFLNSCPKG 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_hnRNPH_ESRPs_RBM12_like 50..125 CDD:409699 29/74 (39%)
RRM2_hnRNPH_CRSF1_like 146..224 CDD:409927 44/82 (54%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:409929 30/73 (41%)
Grsf1NP_848815.2 RRM1_GRSF1 148..226 CDD:410129 31/82 (38%)
RRM2_GRSF1 248..324 CDD:409928 44/79 (56%)
RRM3_GRSF1 400..474 CDD:410132 31/172 (18%)

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