DRSC/TRiP Functional Genomics Resources

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Protein Alignment glo and sym-2

DIOPT Version :10

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_495960.2 Gene:sym-2 / 174461 WormBaseID:WBGene00006367 Length:618 Species:Caenorhabditis elegans


Alignment Length:210 Identity:81/210 - (38%)
Similarity:121/210 - (57%) Gaps:25/210 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 EDDQYNEDGGGKIENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNT 93
            ||.:...||    :||     ..|.|||||.|:...:..|...:::..|  ||.|..|. :|:..
 Worm   170 EDQEVGADG----DNV-----VCRARGLPWQASDHHVAQFFAGLDIVPG--GIALCLSS-EGRRN 222

  Fly    94 GEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKE--------AKEAMRKISGHGTAFVVKL 150
            ||..|:.:|||..:.|.|.::..:..|||||:.|...|        :.|||..:|.:  |.:|::
 Worm   223 GEVLVQFSSQESRDLALKRHRNFLLSRYIEVYKAGLDEFMHVATGSSTEAMEFVSAN--AIIVRM 285

  Fly   151 RGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGH 215
            |||||..|:.||..||..|.: ||:  |||:....||.||:||||||:::|.:|.|.::|:.||.
 Worm   286 RGLPYDCTDAQIRTFFEPLKL-TDK--ILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQ 347

  Fly   216 RYIEIFRSSIAEMKR 230
            ||||:|:|:.||:::
 Worm   348 RYIELFKSTAAEVQQ 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_hnRNPH_ESRPs_RBM12_like 50..125 CDD:409699 26/74 (35%)
RRM2_hnRNPH_CRSF1_like 146..224 CDD:409927 38/77 (49%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:409929
sym-2NP_495960.2 RRM1_ESRPs_Fusilli 182..256 CDD:240951 27/76 (36%)
RRM2_ESRPs_Fusilli 280..355 CDD:409930 39/77 (51%)
RRM3_Fusilli 388..472 CDD:241187
Blue background indicates that the domain is not in the aligned region.

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