DRSC/TRiP Functional Genomics Resources

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Protein Alignment glo and Hnrnph1

DIOPT Version :9

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_038941022.1 Gene:Hnrnph1 / 140931 RGDID:620840 Length:472 Species:Rattus norvegicus


Alignment Length:570 Identity:165/570 - (28%)
Similarity:243/570 - (42%) Gaps:200/570 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEARKLNKA 115
            |::||||||.:..|:..|..:..:.||:.||..:.:| :|:.:|||:||:.|:::|:.|.|.::.
  Rat    13 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTR-EGRPSGEAFVELESEDEVKLALKKDRE 76

  Fly   116 SMGHRYIEVFTATPKEAKEAMRKISGHG--TA--FVVKLRGLPYAVTEQQIEEFFSGLDIKTDRE 176
            :|||||:|||.:...|....::....:.  ||  ..|:|||||:..::::|.:|||||:|..:  
  Rat    77 TMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN-- 139

  Fly   177 GILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSSIAEMK------RATGAG 235
            ||...:|.:||:||||||||.||:..|:||.:::|:|||||||||:||.||::      |...| 
  Rat   140 GITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMA- 203

  Fly   236 GGVGGRPGPYDIRDRGANRGGNDFGGGRNDWGNNGNFGVGANNMLGFNNLPSLMNSGNFGNNQGG 300
               ..||||||  ..||.||.|..|.|                 .||..:               
  Rat   204 ---MQRPGPYD--RPGAGRGYNSIGRG-----------------AGFERM--------------- 231

  Fly   301 NNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNFGNFGNNGGGNFGGNNNGGGGFNSGNN 365
                        ..|.:|||..|.:..|                              |:|.|..
  Rat   232 ------------RRGAYGGGYGGYDDYN------------------------------GYNDGYG 254

  Fly   366 FNSPGGVNNFGNNGGSNFGGNGGGGFNNGGN-FVSSSGVGNFGPIGGGRNNNNGNFGNSGFGNFG 429
            |    |.:.||.:....|.|.....:.:||: |.|::|                           
  Rat   255 F----GSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTG--------------------------- 288

  Fly   430 GNNNVGSNFGGGNNGGGGGFNNGSNFGGGNSMGGGGNFGPIGGGRGNDIEYYTIHMRGLPYTSFE 494
                                                               :.:|||||||.:.|
  Rat   289 ---------------------------------------------------HCVHMRGLPYRATE 302

  Fly   495 NDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHREQMGSRYIELFYDGKTRG 559
            ||::.||.|:.|..|.|.....|..:|.||..|.|:||:..||.:.:..|..||:|||.: .|.|
  Rat   303 NDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLN-STAG 366

  Fly   560 LNGG--EH----------GGGNGG-------GGMG----NNGGGNFSRRI 586
            .:||  ||          .|.:||       ||||    ::.||..|:::
  Rat   367 ASGGAYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQL 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_SF 51..125 CDD:302621 30/73 (41%)
RRM2_hnRNPH_like 146..224 CDD:240948 41/77 (53%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:240950 32/73 (44%)
Hnrnph1XP_038941022.1 RRM1_hnRNPH_hnRNPH2_hnRNPF 10..88 CDD:410128 32/75 (43%)
RRM2_hnRNPH_hnRNPH2_hnRNPF 103..192 CDD:410130 47/90 (52%)
zf-RNPHF 255..290 CDD:369688 11/116 (9%)
RRM3_hnRNPH_hnRNPH2_hnRNPF 289..364 CDD:410133 32/75 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 78 1.000 Domainoid score I8550
eggNOG 1 0.900 - - E1_KOG4211
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 241 1.000 Inparanoid score I3250
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 1 1.000 - - FOG0000855
OrthoInspector 1 1.000 - - otm46264
orthoMCL 1 0.900 - - OOG6_102542
Panther 1 1.100 - - O PTHR13976
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X436
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.870

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