DRSC/TRiP Functional Genomics Resources

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Protein Alignment glo and RBM12

DIOPT Version :9

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001185767.1 Gene:RBM12 / 10137 HGNCID:9898 Length:932 Species:Homo sapiens


Alignment Length:707 Identity:179/707 - (25%)
Similarity:268/707 - (37%) Gaps:201/707 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GQQGNGD--NFNDDSNQ------QQDEDDQYNEDGGGKIENVGESPKFVRLRGLPWSATHKEILD 67
            |..|:|.  |.|::.|.      ......|.|.....|...:.....:|.:.|:|:||...::.|
Human   258 GMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPINPDDLYVSVHGMPFSAMENDVRD 322

  Fly    68 FLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKE- 131
            |...:.|.    .:||:...| |:|.|...|:..|.:|..||.|.|:..|..||:||..||.:: 
Human   323 FFHGLRVD----AVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQW 382

  Fly   132 ---------------------------------AKEAMRKISGHGTAFVVKLRGLPYAVTEQQIE 163
                                             .::..|..|.|...|.|.|:|||:....:.:.
Human   383 VAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVI 447

  Fly   164 EFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIE---IFRSSI 225
            :||..|||..|  .|.......|:||||.||:|.::.|.:.||.|:::.:|:|:|:   |.:..:
Human   448 DFFKKLDIVED--SIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGM 510

  Fly   226 AE-----MKRATGAGGGVGGRPGPYDIRDRGANRGGN-------------DFGGGRND------- 265
            .|     .||.....         ||.|:...|..|:             .|...:.|       
Human   511 LEKIDMIRKRLQNFS---------YDQREMILNPEGDVNSAKVCAHITNIPFSITKMDVLQFLEG 566

  Fly   266 -----------WGNNGNFGVG----------------------ANNMLGFNNLPSLMNSGNFGNN 297
                       ..|||. |:|                      .|....|.::.:|.:......|
Human   567 IPVDENAVHVLVDNNGQ-GLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREIEKN 630

  Fly   298 ---QG---------GNNGNFG-NNSGPSNFGNFGGGNNG------GNSGNFGNDSGNSGNFGNFG 343
               ||         ||....| .|:|....|....|..|      |..|:....:|..|  ....
Human   631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG--AGMP 693

  Fly   344 NNGGGNFGGNNN-----GGGGFNSGNNFNSPGGVNNFGNNGGSN-FG------GNGGGGFNN--- 393
            :.|..:.||..:     |....|:|..||.|      ||.|||| ||      |.|||.|.:   
Human   694 SAGIPSAGGEEHAFLTVGSKEANNGPPFNFP------GNFGGSNAFGPPIPPPGLGGGAFGDARP 752

  Fly   394 GGNFVSSSGVGNFG----PIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFNNG-- 452
            |...|.:||:...|    ..|||.||.:   |.||||  ||..|.|:  |.|:.||..||.:|  
Human   753 GMPSVGNSGLPGLGLDVPGFGGGPNNLS---GPSGFG--GGPQNFGN--GPGSLGGPPGFGSGPP 810

  Fly   453 ------SNFGGGNSMGGGGNFGP------IGG--------GRGNDIEYYTIHMRGLPYTSFENDV 497
                  .:.||..:.|.|...||      |||        |:....   .|.::.:|:|...:::
Human   811 GLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPT---VIKVQNMPFTVSIDEI 872

  Fly   498 FKFF--EPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVA-MKRHREQMGSRYIEL 551
            ..||  ..:.|.:|.:.||:||:.:|.|...|::.:::..| :..:...:|||.::|
Human   873 LDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 929

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_SF 51..125 CDD:302621 25/73 (34%)
RRM2_hnRNPH_like 146..224 CDD:240948 29/80 (36%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:240950 19/74 (26%)
RBM12NP_001185767.1 RRM1_RBM12 1..92 CDD:241189
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..116
RRM2_RBM12 303..377 CDD:241191 26/78 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 392..424 1/31 (3%)
RRM3_RBM12 421..521 CDD:240956 34/101 (34%)
RRM4_RBM12 545..632 CDD:241193 11/87 (13%)
Sporozoite_P67 <633..>764 CDD:253298 40/138 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 717..853 53/148 (36%)
RRM5_RBM12 855..929 CDD:241195 18/76 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155217
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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