DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment glo and grsf1

DIOPT Version :9

Sequence 1:NP_650120.1 Gene:glo / 41431 FlyBaseID:FBgn0259139 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_031748425.1 Gene:grsf1 / 100337653 XenbaseID:XB-GENE-965150 Length:440 Species:Xenopus tropicalis


Alignment Length:532 Identity:133/532 - (25%)
Similarity:193/532 - (36%) Gaps:225/532 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEARKLNKA 115
            ||:||||||.|..::|:|..:.||.||:.|:|.:.:| |||..|:|.:|..|.|||::|.:.:|.
 Frog    96 VRVRGLPWSCTADDVLNFFGDSNVRNGTEGVHFIFNR-DGKPRGDAVIEFESAEDVQKAVEQHKK 159

  Fly   116 SMGHRYIEVFTATPKEAKEAMRKISGHGTAF----------------------VVKLRGLPYAVT 158
            .||.||:|||....|||:..:.::  |....                      ||:||||||:.:
 Frog   160 YMGQRYVEVFEMNQKEAESLLNRM--HSALSPTRPSSMSLSPQSSMASPPSDGVVRLRGLPYSCS 222

  Fly   159 EQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRS 223
            ||.|..|||||||..  |||.||:|:|||.:|||||||.||:..:|||.:::::||.||||||.|
 Frog   223 EQDIIHFFSGLDIAD--EGITFVLDQRGRKSGEAFVQFLSQEHADQALLKHKQEIGSRYIEIFPS 285

  Fly   224 SIAEMKRATGAGGGVGGRPGPYDIRDRGANRGGNDFGGGRNDWGNNGNFGVGANNMLGFNNLPSL 288
            ...|::.|.            :..|    .|.|..|.                      ..:..|
 Frog   286 RRNEIQTAR------------FPFR----RRKGVTFA----------------------PTIKDL 312

  Fly   289 MNSGNFGNNQGGNNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNFGNFGNNGGGNFGGN 353
            .:..|..||                                                        
 Frog   313 YDPDNCINN-------------------------------------------------------- 321

  Fly   354 NNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSSSGVGNFGPIGGGRNNNNG 418
                         .|...:::...||..|             ::|...                 
 Frog   322 -------------TSKDLLSDVPENGHIN-------------DYVKEM----------------- 343

  Fly   419 NFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFNNGSNFGGGNSMGGGGNFGPIGGGRGNDIEYYT- 482
                                                                 ..:..|::.:| 
 Frog   344 -----------------------------------------------------SAKSMDVQDFTV 355

  Fly   483 ------IHMRGLPYTSFENDVFKFFEPIRPANVRINYN-KKGLHSGTADAYFDTYEDSQVAMKRH 540
                  ||:||||:.:...|:..||.||.|..:.|.|: ..|..:|.|...|.|:||:..||.::
 Frog   356 MSPVHDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGGATGEAVVRFLTHEDAVAAMAKN 420

  Fly   541 REQMGSRYIELF 552
            |......|:||:
 Frog   421 RCHTQHGYLELY 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gloNP_650120.1 RRM_SF 51..125 CDD:302621 35/73 (48%)
RRM2_hnRNPH_like 146..224 CDD:240948 47/99 (47%)
RRM3_hnRNPH_CRSF1_like 481..555 CDD:240950 28/80 (35%)
grsf1XP_031748425.1 RRM1_GRSF1 93..171 CDD:410129 37/75 (49%)
RRM2_GRSF1 209..286 CDD:409928 47/78 (60%)
RRM3_GRSF1 360..435 CDD:410132 27/73 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8281
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 210 1.000 Inparanoid score I3576
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 1 1.000 - - FOG0000855
OrthoInspector 1 1.000 - - otm49347
Panther 1 1.100 - - O PTHR13976
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X436
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.070

Return to query results.
Submit another query.