DRSC/TRiP Functional Genomics Resources

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Protein Alignment ClC-a and CLC-F

DIOPT Version :10

Sequence 1:NP_788639.1 Gene:ClC-a / 41428 FlyBaseID:FBgn0051116 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_564698.1 Gene:CLC-F / 842011 AraportID:AT1G55620 Length:781 Species:Arabidopsis thaliana


Alignment Length:724 Identity:151/724 - (20%)
Similarity:261/724 - (36%) Gaps:208/724 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 LGE----DWVFL---ALLGIIMALLSFIMDKGISICTNARIWLYRDLTSQPFVQYIAWVSLP--- 222
            ||:    :|..|   .|:|:...:.....:||:.:...   |.:....::.    .||:.|.   
plant   121 LGDSAPPEWALLLIGCLIGVAAGICVAGFNKGVHVIHE---WAWAGTPNEG----AAWLRLQRLA 178

  Fly   223 -----VCLILFSAGFVHLIAPQSIG--SGIPEMKTILRGV-----QLKEYLTFKTLVAKVIGLTA 275
                 :.||..:.|.:       :|  .|:.|:...:|..     |..::|.....|.|.|....
plant   179 DTWHRILLIPVTGGVI-------VGMMHGLLEILDQIRQSNSSQRQGLDFLAGIYPVIKAIQAAV 236

  Fly   276 TLGSGMPLGKEGPFVHIASIVAQLLSKLVTSFQGIYENESRNSEMLAAACAVGVGACFAAPVGGV 340
            |||:|..||.|||.|.|....|...:.::.:      |..|...:.||..|.|:.:.|.|.|.|.
plant   237 TLGTGCSLGPEGPSVDIGKSCANGFALMMEN------NRERRIALTAAGAASGIASGFNAAVAGC 295

  Fly   341 LFSIEVT------------TTYFAVRNYWRGFFAAVCGATVFRLLAVWFQNADTVRALFLTNFTT 393
            .|:||..            ||...:       .|:|..:||...| :..|:|.||.:..|.:   
plant   296 FFAIETVLRPLRAENSPPFTTAMII-------LASVISSTVSNAL-LGTQSAFTVPSYDLKS--- 349

  Fly   394 EFPFDPQELFVFALIGLVCGLGGASYVWVHRRYVLFMRSNKRMNKFLQKNRFLYP-------GFL 451
                 ..||.::.::|::|   ||..|...|....|.:|    ..|: |::|..|       |.|
plant   350 -----AAELPLYLILGMLC---GAVSVVFSRLVTWFTKS----FDFI-KDKFGLPAIVCPALGGL 401

  Fly   452 ALLVSSISFPLGTGQFLAGELSTHEQVTQLFSNFTWSRDDL-TVEQAAVVTHWMTSYTSVFGNLV 515
            ...:.::.:| |.                |:..||...:.| |.:.|:....|:.:..:      
plant   402 GAGIIALKYP-GI----------------LYWGFTNVEEILHTGKSASAPGIWLLAQLA------ 443

  Fly   516 IYTLFTFVVSIIASTI----PVPSGMFIPVFKIGAGFGRLVGEFMAVTFPHGVRYGGRLSPIMPG 576
                   ...::|:.:    .:..|::.|...|||..|.:.|...|......:  .|..:...|.
plant   444 -------AAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINRAI--PGNAAVAQPQ 499

  Fly   577 GYAVVGAAAFSGSVTHT-VSVAVIIFEMTGQITHVVPVMIAVLVANAVAALLQPSI--------- 631
            .||:||.||...|:... ::..:::||:|.....::|:|.||.:     |:..||:         
plant   500 AYALVGMAATLASMCSVPLTSVLLLFELTKDYRILLPLMGAVGL-----AIWVPSVANQGKESDS 559

  Fly   632 ---------YDSIILIKKLPYLPDLLPS---SSGMY--------------------SIFVEDFMV 664
                     |.|            |.||   :.|::                    |...|:.::
plant   560 SEGRSTGRGYSS------------LSPSERKTEGVWRHTDNADSLELTVIENPDHNSFLDEETIL 612

  Fly   665 RDVKY----------IWHGISYQKLKEVLKLNKTLRSLPLVDSPD---NMILLGSVQRYELIKMI 716
            .|:|.          :..|.:.::.:.:|| ......:.:||..|   .::..|.::||  :...
plant   613 EDLKVMRVMSKNYVKVSSGTTLREARNILK-ESHQNCIMVVDDDDFLAGILTHGDIRRY--LSNN 674

  Fly   717 EKHIGREKRMEVAQKWQKEAQERALEEEKKKQEVELKMRRPSRFEVLPAPDILSLRQIANDEMLP 781
            ...|..|....|:....|:...|.       ||..|....|.. .|..|.:::..|.:   :.||
plant   675 ASTILDENTCPVSSVCTKKISYRG-------QERGLLTCYPDA-TVGVAKELMEARGV---KQLP 728

  Fly   782 PKKRAETMH 790
            ..||.|.:|
plant   729 VVKRGEVIH 737

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClC-aNP_788639.1 ClC_1_like 171..646 CDD:239655 114/535 (21%)
CBS_pair_SF 659..>718 CDD:449531 12/71 (17%)
CBS repeat 664..715 CDD:341358 11/63 (17%)
CBS_pair_SF <1032..1096 CDD:449531
CBS repeat 1053..1095 CDD:341358
CLC-FNP_564698.1 Voltage_gated_ClC 139..544 CDD:238233 106/485 (22%)
PLN02274 <567..>673 CDD:215154 19/120 (16%)
CBS_pair_voltage-gated_CLC_euk_bac 621..754 CDD:341368 27/131 (21%)
CBS repeat 622..690 CDD:341368 12/70 (17%)
CBS repeat 704..754 CDD:341368 10/38 (26%)
Blue background indicates that the domain is not in the aligned region.

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