DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sbf and mtmr1b

DIOPT Version :9

Sequence 1:NP_477401.2 Gene:Sbf / 41427 FlyBaseID:FBgn0025802 Length:1993 Species:Drosophila melanogaster
Sequence 2:NP_001014352.1 Gene:mtmr1b / 541517 ZFINID:ZDB-GENE-050327-48 Length:649 Species:Danio rerio


Alignment Length:711 Identity:171/711 - (24%)
Similarity:264/711 - (37%) Gaps:240/711 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   961 GALFLTNYRVIFKGSPCDPLFCEQVIVRTFPIASLLKEKKISVLYLAHLDQTLTEGLQLRSSSFQ 1025
            |.|.:|::::.||....|..|   |:.......|.|:    |:...:|.|.  |:||::.....:
Zfish   115 GTLTITDFKLYFKSLTRDSPF---VLDVNLGAVSRLE----SIAVQSHGDD--TQGLEIVCKDLR 170

  Fly  1026 LIKVAFDPEVTPEQIESFRKILSKARHPFD-EFEYFAFQSYGTMLQGVAPLKTKEKYSTLKGFAK 1089
            ..:.|:..| ....:|.| |||||...|.. ....|||             |.:|.:.       
Zfish   171 TPRFAYKKE-GQSNLEMF-KILSKYAFPLSHNLPLFAF-------------KYRETFP------- 213

  Fly  1090 KTLLRGAKKAGFKQKQQTKRKLVSDYDYGSADAQETQSIDDELEDGDEFETQNNAMPRLLTTKDV 1154
                                                       |||                   
Zfish   214 -------------------------------------------EDG------------------- 216

  Fly  1155 ERMRERSYVQDWKRLGFDAESQRGFRISNANTSYATCRSYPAIIVAPVQCSDAAIMHLGRCFKGQ 1219
              .:....|.::||.|...||   :.||..|:.|..|.:|||::|.|...::..:..:......:
Zfish   217 --WKIYDPVAEYKRQGLPNES---WIISKVNSGYEVCETYPALLVLPSNVTEDELKRVAAFRAKR 276

  Fly  1220 RIPLPTWRHANG-ALLIRGGQPNSKSVIGMLKNTTGSTTNAHHDVTHYPEQDKYFLALINTMPKL 1283
            |.|:.:|.|... |.::|.|||.           .|.:..      ...|.::|...:::...:.
Zfish   277 RFPVLSWIHPESQAAIVRCGQPQ-----------VGPSDR------RCREDERYLQTILDANAQS 324

  Fly  1284 TPLALNQYSGMNLSMSSLMGHSSSDDRQPLTPELSRKHKNNLDISDGNKSSQGGKGGTMKGNPKN 1348
            ..|.:                  .|.||.             .::|.||:..||.          
Zfish   325 HKLCI------------------FDARQS-------------TVADTNKAKDGGY---------- 348

  Fly  1349 SLAHPFRKMRLYALGEKSQAKSNMNVDFCADFIPVDYPDIRQSRPAFKKLIRACMPSHNTNEADG 1413
                           |......|:.::|      ::.|:|...|.:.:||.....|:     .|.
Zfish   349 ---------------ENESFYINVELNF------LEIPNIHVMRESLRKLKEVVYPA-----IDQ 387

  Fly  1414 QSFAKMVEQSDWLQQISSLMQLSGAV--VDLIDLQESSVMLSLEDGSDVTAQLSSIAQLCLDPYY 1476
            |.:...|:.:.||:.:..|  |:|||  .|.|:..::||::...||.|.||||:|:|.|.||.:|
Zfish   388 QHWFSNVDATHWLEYVRLL--LAGAVRIADRIESGKTSVVVHCSDGWDRTAQLTSLAMLMLDAHY 450

  Fly  1477 RSLDGFRVLVEKEWLAFGHRFAHR-SNLKPSHANTNIAFAPTFLQFLDVVHQLQRQFPMAFEFND 1540
            |||.||:||:|||||:||||||.| .:...:|||:.  .:|.|:||:|.|.|:.||||.|||||:
Zfish   451 RSLKGFQVLLEKEWLSFGHRFASRVGHGDGNHANSE--RSPLFVQFIDCVWQMTRQFPSAFEFNE 513

  Fly  1541 FYLRFLAYHSVSCRFRTFLFDCELERSDSGIAAMEDKRGSLNAKHMFGAGGMATNGSDDECSVYP 1605
            .:|..:..|..||.|.|||::.|.||...                                .||.
Zfish   514 LFLITVLDHLFSCLFGTFLYNSEQERVSK--------------------------------EVYN 546

  Fly  1606 LDIRSQRAPAPLNRIGHSIFDYIERQHNKTPIFYNFLYSGDKSVTLRPQNNVAALDLWCYY 1666
            ..:              |::.|:..|..:   |.|.||...:...|.|..::..|:||..|
Zfish   547 KTV--------------SLWSYVNSQIEE---FTNPLYVNYEHHVLYPIASLRHLELWVSY 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SbfNP_477401.2 uDENN 1..91 CDD:214824
DENN 142..325 CDD:280329
dDENN 384..452 CDD:129037
SBF2 585..807 CDD:289132
PH-GRAM_MTMR5_MTMR13 933..1047 CDD:275396 21/85 (25%)
Myotub-related 1161..1565 CDD:284109 120/407 (29%)
C1 1791..1838 CDD:237996
PH_Sbf1_hMTMR5 1888..1993 CDD:269941
PH 1891..1992 CDD:278594
mtmr1bNP_001014352.1 PH-like 97..196 CDD:302622 25/91 (27%)
Myotub-related 203..538 CDD:284109 128/509 (25%)
3-PAP <572..628 CDD:289355 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590782
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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