DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sbf and mtmr6

DIOPT Version :9

Sequence 1:NP_477401.2 Gene:Sbf / 41427 FlyBaseID:FBgn0025802 Length:1993 Species:Drosophila melanogaster
Sequence 2:XP_002940601.3 Gene:mtmr6 / 100497758 XenbaseID:XB-GENE-994672 Length:622 Species:Xenopus tropicalis


Alignment Length:617 Identity:152/617 - (24%)
Similarity:234/617 - (37%) Gaps:155/617 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1156 RMRERSYVQDWKRLGFDAESQR------GFRISNANTSYATCRSYPAIIVAPVQCSDAAIMHLGR 1214
            :.:|...|..|:.:....|.||      .:::|:.|..|..|.:||..:..|:..|...|:...:
 Frog   115 KQKESEGVLGWQHIDLKEEYQRMGVPNSYWQLSDVNRDYKVCDTYPRELYVPITASKPIIVGSSK 179

  Fly  1215 CFKGQRIPLPTWRH-ANGALLIRGGQPNSKSVIGMLKNTTGSTTNAHHDVTHYPEQDKYFLALIN 1278
            .....|.|:.::.| |..|.:.|..||.|......|                   :|::.|..|:
 Frog   180 FRSKGRFPVLSYYHQAKKAAICRCSQPLSGFSARCL-------------------EDEHMLQSIS 225

  Fly  1279 TMPKLTPLALNQYSGMNLSMSSLMGHSSSDDRQPLTPELSRKHKNNLDISDGNKSSQGGKGGTMK 1343
               |..|:....|              ..|.|..|....:|               ..|||    
 Frog   226 ---KANPVCRLMY--------------VMDTRPKLNAMANR---------------AAGKG---- 254

  Fly  1344 GNPKNSLAHPFRKMRLYALGEKSQAKSNMNVDFCADFIPVDYPDIRQSRPAFKKLIRACMPSHNT 1408
                            |   |.:...||:...|      |...:|...|.:.:||:..|    .|
 Frog   255 ----------------Y---ENADNYSNIKFQF------VGIENIHVMRSSLQKLLEVC----GT 290

  Fly  1409 NEADGQSFAKMVEQSDWLQQISSLMQLSGAVVDLIDLQESSVMLSLEDGSDVTAQLSSIAQLCLD 1473
            .......|...:|.|.||:.|.:::..|..:...|:.:.:||::...||.|.|:|:.|:..|.||
 Frog   291 KALTANDFYNGLENSGWLRHIKAVLDASVCLAKAINDENASVLVHCSDGWDRTSQVCSLGSLLLD 355

  Fly  1474 PYYRSLDGFRVLVEKEWLAFGHRFAHRSNLKPSHANTNIAFAPTFLQFLDVVHQLQRQFPMAFEF 1538
            .:||::.||.||:||||:||||:|:.|.....|.:.   ..||.|.|||:.|.||..|||.||||
 Frog   356 SFYRTIKGFMVLIEKEWIAFGHKFSDRCGQLDSDSK---EIAPVFTQFLECVWQLMEQFPRAFEF 417

  Fly  1539 NDFYLRFLAYHSVSCRFRTFLFDCELERSDSGIAAMEDKRGSLNAKHMFGAGGMATNGSDDECSV 1603
            |:.:|..:..|..||:|..||.:|:.||.:   ..:::|..||.| |:.|......|...|:.|:
 Frog   418 NEDFLLQIHEHVYSCQFGNFLGNCQKEREE---LRLKEKTHSLWA-HLLGEKSKYRNPVFDKNSL 478

  Fly  1604 YPLDIRSQRAPAPLNRIGHSIFDYIERQHNKTPIFYNFLYSGDKSVTLRPQNNVAALDLWCYYTN 1668
            ..|.....      |.| |..|.:...      :::.|      .:.:.|:.:|.:|.|      
 Frog   479 RTLPFLEP------NTI-HFSFKFWRN------MYHQF------DLNMHPRQSVPSLLL------ 518

  Fly  1669 EELAQGAPYDLEVTTVDD----EIDLSETKGKRMVITAGYDNMEKCNPSAYVCLLSEVKQAETER 1729
                         .|:|:    |.:|.:.|.|       ..|:.|...|.....|.....|..||
 Frog   519 -------------KTIDESKCLEEELKQLKIK-------IRNLTKGEGSGSTDSLRSTPPASPER 563

  Fly  1730 GHLP--QKWLQVWNSLEVPQLEPVARNTSLGN 1759
            ...|  :|      .||:|.:....|.....|
 Frog   564 KQSPCFEK------ELEMPPVSDAIRTAEGSN 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SbfNP_477401.2 uDENN 1..91 CDD:214824
DENN 142..325 CDD:280329
dDENN 384..452 CDD:129037
SBF2 585..807 CDD:289132
PH-GRAM_MTMR5_MTMR13 933..1047 CDD:275396
Myotub-related 1161..1565 CDD:284109 110/410 (27%)
C1 1791..1838 CDD:237996
PH_Sbf1_hMTMR5 1888..1993 CDD:269941
PH 1891..1992 CDD:278594
mtmr6XP_002940601.3 PH-GRAM_MTMR6 1..101 CDD:270151
PTP_DSP_cys 130..431 CDD:421693 102/387 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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