DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sbf and mtmr4

DIOPT Version :10

Sequence 1:NP_477401.2 Gene:Sbf / 41427 FlyBaseID:FBgn0025802 Length:1993 Species:Drosophila melanogaster
Sequence 2:XP_004911826.1 Gene:mtmr4 / 100151726 XenbaseID:XB-GENE-986315 Length:1093 Species:Xenopus tropicalis


Alignment Length:962 Identity:220/962 - (22%)
Similarity:342/962 - (35%) Gaps:327/962 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   907 EPVYLEAKRHPHVQKPKIQTPCLLPGEDLVTDHLRCFLMPDGREDETQC---LIPAEGALFL--- 965
            ||..||          .||...|.|..:||.:           |::.|.   ::|.||..:|   
 Frog    19 EPPSLE----------YIQAKDLFPPRELVKE-----------EEKLQVPFPVLPGEGVEYLGSA 62

  Fly   966 -------TNYRVIFKGSPCDPLFCEQVIVRTFPIASLLKEKKISVLYLAHLDQTLTEGLQLRSSS 1023
                   :|||:..|       |.:.||                     ::...:.|.::.| ..
 Frog    63 NDAVIAISNYRLHIK-------FKDSVI---------------------NVPLRMIEAVESR-DM 98

  Fly  1024 FQLIKVAFDPEV------TPEQIESFRKILSKAR-HPFDEFEYFAFQSYGTMLQGVAPLKTKEKY 1081
            |||..:..|.:|      |.:|.:.:.|.||:|. .|..:.:.||| :|....||:..       
 Frog    99 FQLQIICKDSKVVRCHFSTFKQCQEWLKRLSRATLRPAKQEDLFAF-AYHAWCQGICT------- 155

  Fly  1082 STLKGFAKKTLLRGAKKAGFKQKQQTKRKLVSDYDYGSADAQETQSIDDELEDGDEFETQNNAMP 1146
                                                                  ||.|      |
 Frog   156 ------------------------------------------------------DEEE------P 160

  Fly  1147 RLLTTKDVERMRERSYVQDWKRLGFDAESQRGFRISNANTSYATCRSYPAIIVAPVQCSDAAIMH 1211
            .:...:..:.::.| :..:..|:|||.  |..:|:|..|.:|..|.|||..::.||..:|..:.:
 Frog   161 LIHLCRPGDHVKSR-FQMELVRMGFDL--QNAWRVSEINNNYKLCPSYPQKLLVPVWITDKELEN 222

  Fly  1212 LGRCFKGQRIPLPTWRHA-NGALLIRGGQPNSKSVIGMLKNTTGSTTNAHHDVTHYPEQDKYFLA 1275
            :......:|||:..:||. .||::.|..||         :.:.....||         .|:|.:.
 Frog   223 VASFRSWKRIPVVVYRHTRTGAVIARCSQP---------EISWWGWRNA---------DDEYLVT 269

  Fly  1276 LINTMPKLTPLALNQYSGMNLSMSSLMGHSSSDDRQPLTPELSRKHKNNLDISDGNKSS------ 1334
            .|.....|.|..                      |.|.....|:::|:..|.||.:..|      
 Frog   270 SIAKACALNPAV----------------------RMPNGNASSKENKDGSDNSDTDFDSSLTACP 312

  Fly  1335 -QGGKGGTMKGNPKNSLAHPFRKMRLYALGEKSQAKSNMNVDFCADFIP------VDYPDIRQSR 1392
             :||      |.|:..|   ....|.|.....::||.....  |.::.|      :...:|...|
 Frog   313 VEGG------GVPQKLL---IVDARSYTAAVANRAKGGGCE--CEEYYPNCEVAFMGMANIHSIR 366

  Fly  1393 PAFKKLIRACMPSHNTNEA-DGQSFAKMVEQSDWLQQISSLMQLSGAVVDLIDLQESSVMLSLED 1456
            .:|:.|...|      |:. |..::...:|.:.|||.:|::::.:..|.:.:|.:|..|::...|
 Frog   367 NSFQYLRAVC------NQVPDPGNWLSALESTKWLQHLSAMLKAATVVANAVDREERPVLVHCSD 425

  Fly  1457 GSDVTAQLSSIAQLCLDPYYRSLDGFRVLVEKEWLAFGHRFA----HRSNLKPSHANTNIAFAPT 1517
            |.|.|.|:.|:|:|.||||||:|:||:||||.:||.:||:||    |:.|.:..:..     .|.
 Frog   426 GWDRTPQIVSLAKLLLDPYYRTLEGFQVLVETDWLDYGHKFADRCGHQENTEDQNEQ-----CPV 485

  Fly  1518 FLQFLDVVHQLQRQFPMAFEFNDFYLRFLAYHSVSCRFRTFLFDCELERSDSGIAAMEDKRGSLN 1582
            |||:||.:|||..|||..||||..:|..|..|:.||.:.|||.:...||....|.    ||    
 Frog   486 FLQWLDCIHQLLLQFPCHFEFNHAFLVKLVQHTYSCLYGTFLANNLCEREMRNIY----KR---- 542

  Fly  1583 AKHMFGAGGMATNGSDDECSVYPLDIRSQRAPAPLNRIGHSIFDYIERQHNKTPIFYNFLYSGDK 1647
                             .|||:.|                      .|..||.  |:|.||....
 Frog   543 -----------------TCSVWSL----------------------LRTGNKN--FHNLLYMPGS 566

  Fly  1648 SVTLRPQNNVAALDLWCYYTNEELAQGAPYDLEVTTVDDEIDLSETKGK-----------RMVIT 1701
            .:.|.|..:|.||.||       .|...|.....|.:||.:::..|...           |:..|
 Frog   567 DLVLHPVCHVRALQLW-------TAVYLPATSPCTPMDDRMEMYLTPASQGPEFNARSLDRLPKT 624

  Fly  1702 AGYDN-------------------------MEKCNPSAYVCLLSEVKQA-ETERGHLPQKWLQVW 1740
            ...||                         :|.|:.|         |:. |||...:.|:.|...
 Frog   625 RSMDNLLTACDGGGLLTRTSSDPNLNHQGILEPCSSS---------KEGNETEIHDIQQQALSTE 680

  Fly  1741 NSLEVPQLEPVA---RNTSLGNIFVQTHQHKRSTLEIIMKGRLAGYQDKYFH 1789
            ...|...|:..:   .|...|....||:..:.:....:...:|....|:..|
 Frog   681 PKEEGRDLDSKSTECENKDTGEFRNQTNNEQNALKNSLSVAKLDSVDDRRDH 732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SbfNP_477401.2 uDENN 1..91 CDD:214824
DENN 142..325 CDD:460461
dDENN 384..452 CDD:129037
SBF2 584..807 CDD:463536
PH-GRAM_MTMR5_MTMR13 933..1047 CDD:275396 25/132 (19%)
PTP-MTMR5-like 1179..1531 CDD:350382 101/370 (27%)
C1_Sbf-like 1790..1840 CDD:410377 220/962 (23%)
PH_Sbf1_hMTMR5 1888..1993 CDD:269941
mtmr4XP_004911826.1 PH-GRAM_MTMR4 37..150 CDD:270150 33/153 (22%)
PTP-MTMR4 188..495 CDD:350435 98/368 (27%)
FYVE_MTMR4 1009..1068 CDD:277272
Blue background indicates that the domain is not in the aligned region.

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