DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and gabrg1

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:XP_009305483.1 Gene:gabrg1 / 556202 ZFINID:ZDB-GENE-141215-66 Length:454 Species:Danio rerio


Alignment Length:419 Identity:132/419 - (31%)
Similarity:212/419 - (50%) Gaps:59/419 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 YESSLSLPDILPIPSKTYDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDP 114
            |||.::|  ||....:.||....|.:..:|||:...|.|.|:..::..:|.|..|||.||:|.|.
Zfish    51 YESDVTL--ILNKLLQGYDNKLRPDIGVRPTVIETAVYVNSIGPVDPINMEYTIDIFFAQTWYDS 113

  Fly   115 RLRLPENMSEQYRILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLV 179
            ||:.  |.|.:..:|:.:.:..||.||.||:|::|...|.::.||..|.|:.:..::|..:||:.
Zfish   114 RLKF--NSSMKLLMLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRLWSNGRVMYTLRLTIN 176

  Fly   180 LSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNMTDPLVVNTEI-ELPQL---------DIS 234
            ..|.:|..::|.|...|.:...|..:...::.:.|......|.:... .|.|.         |::
Zfish   177 AECYLKLHNFPMDEHSCPLEFSSYGYPKNEIQYRWQRRSVEVADQRYWRLYQFAFVGLRNSSDVA 241

  Fly   235 NNYTTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLG 299
            |.         .:|.:..:.|.|:|.||:||....||||.::|||:||:||||..:|:|||.:||
Zfish   242 NT---------QSGEYVVMTIFFDLSRRMGYFTIQTYIPCSMIVVLSWVSFWINKDAVPARTSLG 297

  Fly   300 VTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNFMGPVATKAMKGY-- 362
            :|::||:.|.:|.|::|||.||||.|:|:::|.|.:|.|.:|||:..::.|......|..|..  
Zfish   298 ITTVLTMTTLSTISRKSLPKVSYVTAMDLFVSVCFIFTFAALMEYGTLHYFTSNRQNKKTKSSHA 362

  Fly   363 ---SDENI---SDLDDLKSALQHHRESIIEPQYDT---------FC---------------HGHA 397
               |..||   :.|..:.:...:|.:.  :..|:.         ||               |.|.
Zfish   363 QKPSMVNIRPGTSLLQMNNIAPYHEDD--DYAYECLDGKDCTSFFCCFDDCRSGAWRENRMHVHV 425

  Fly   398 TAIYIDKFSRFFFPFSFFILNIVYWTTFL 426
            :.  ||.:||.|||.:|.:.|:|||..:|
Zfish   426 SK--IDSYSRIFFPTAFGLFNLVYWIGYL 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 55/204 (27%)
Neur_chan_memb 270..>350 CDD:280999 41/79 (52%)
gabrg1XP_009305483.1 Neur_chan_LBD 56..261 CDD:280998 59/217 (27%)
LIC 58..451 CDD:273305 127/407 (31%)
Neur_chan_memb 268..448 CDD:280999 64/183 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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