DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HisCl1 and Grd

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster


Alignment Length:646 Identity:139/646 - (21%)
Similarity:229/646 - (35%) Gaps:240/646 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLVEFRCLIALAIYLHALEQSI--------QHCHCVHGYRNNTESAELVSHYESSL--------- 54
            ||:...||:.|.||.:|...||        .....:.|..:.....|:.:...|||         
  Fly    40 KLLISCCLLMLCIYPNAWPWSIGPGSGPFSVSADSIKGRGDTHRLGEMGTSLSSSLPSSWLTQSN 104

  Fly    55 ---SLPDILPIPSKTYDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRL 116
               ::.::|....:.||.:..|...|.|..:...:.|.|:..|:|..|||..|.:..|||.|.||
  Fly   105 NHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDKRL 169

  Fly   117 RLPENMSEQYRILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLS 181
            ..  ..::....|.|..|..||:||.:|.|.|:...|.::.||.::.:|.:..:||.|:||:...
  Fly   170 AF--EGAQDTLALSVSMLARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAG 232

  Fly   182 CAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNM-TDPLVVNTEIELPQLDISNNYTTDC---- 241
            |.|....:|.|.|.|.:...|..:|..|:::.||. ..|:.:..:::|.|.|:     .||    
  Fly   233 CPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDL-----VDCPAGN 292

  Fly   242 ----------------------------------------------------------------- 241
                                                                             
  Fly   293 LTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGG 357

  Fly   242 ---------TIEYSTGN---FTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPA 294
                     ||...|.:   ::.|.:.|:|:|.:|..|...|.|..|:||:||:|||:..||...
  Fly   358 SGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATAD 422

  Fly   295 RVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVV------------ 347
            ||:||:|::||:.....:::..||.|||..|:|.::.....|:|.::::||||            
  Fly   423 RVSLGITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTKYGSGECY 487

  Fly   348 -------------------NNFMGPVATK------------------------------------ 357
                               ::|.|...:|                                    
  Fly   488 FIIEELDSESGESETEPLTSDFRGSTESKIYEVIPLSMCAISMPPPPTRLGMLTSRNRRPRNRRH 552

  Fly   358 ---AMK--GYSD----------ENISDLDDLKSALQ----------------------------- 378
               :||  |..|          ::..|.||.::.|:                             
  Fly   553 GLWSMKLLGLFDWRRRRKPPRADSDEDEDDEQTQLRANEAPTTSAAAAAAQAAAQAARISPPTGG 617

  Fly   379 -----HHRESIIE--------PQYDTFCHGHATAIYIDKFSRFFFPFSFFILNIVYWTTFL 426
                 ::|...:|        |||::...       ||:.||..||..|.::|:.||..:|
  Fly   618 RRRMSYYRREEMEARRKGKRTPQYNSVSK-------IDRASRIVFPLLFILINVFYWYGYL 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 61/276 (22%)
Neur_chan_memb 270..>350 CDD:280999 32/110 (29%)
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 56/222 (25%)
LIC 111..670 CDD:273305 123/572 (22%)
Neur_chan_memb 398..667 CDD:280999 56/275 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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