DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and lgc-36

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_001023766.1 Gene:lgc-36 / 3565335 WormBaseID:WBGene00008551 Length:536 Species:Caenorhabditis elegans


Alignment Length:369 Identity:104/369 - (28%)
Similarity:177/369 - (47%) Gaps:44/369 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SKLVEFRCLIALAIYLHALEQSIQHC-----------HCVHGYRNNTESAELVSHYESSLSLPDI 59
            |.::.|...|.|::..:.|:.:|::.           ..||..|.. ..|:.|:|.     |.::
 Worm    11 SLIIFFISTIILSVCGNELKFTIENVKFRSPGSFRIKRTVHPKREK-GVAQNVTHL-----LNNV 69

  Fly    60 LPIPSKTYDKNRAPKL-LGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMS 123
            |    |.||::..|.. .|:||.||..:.:.::..:::...||..:.:..|.|.|.||.. .|..
 Worm    70 L----KNYDQHFRPGFNSGKPTKVYIDLFIRTMGPVSDLFNTYSFNCYFRQKWTDDRLHF-NNSG 129

  Fly   124 EQYRILDVD--WLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKF 186
            ..:|.|.:.  .|..||:||.:|.|......|.::..|..:.|..|.|:||.|::|:...|.|..
 Worm   130 IGFRQLSLSMAMLDKIWKPDTYFWNGAGSYVHGITTSNRLVRLEPDGTILYSSRITVKAKCQMDM 194

  Fly   187 ESYPHDTQICSMMIESLSHTVEDLVFIWN-MTDPLVVNTEIE----LPQLDISN-------NYTT 239
            ..||.|.|.|.::|.|.:::.:::.:.|. |.|...|..:.|    |||..:|.       |.|.
 Worm   195 SRYPLDKQACRLVIGSYAYSSDEVQYKWRIMGDDNGVKIDYESIADLPQFSLSGFKVYKPANITR 259

  Fly   240 DCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLL 304
            |  .|||     .|.:.|...|..||.|.:.|:|.||:|::.|::|:.|.||...|:.:|:|::|
 Worm   260 D--KEYS-----ALEVRFYFDRHFGYFLMNFYVPCALVVLLCWVAFFTKREATAERIGIGITNVL 317

  Fly   305 TLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVN 348
            |:...:..|:...|.|....|::|::..|.:...:.::||.||:
 Worm   318 TIVLISMDSKSDSPKVDSPTALEVFIWICYLTHLICMVEFTVVH 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 60/209 (29%)
Neur_chan_memb 270..>350 CDD:280999 25/79 (32%)
lgc-36NP_001023766.1 LIC 48..520 CDD:273305 98/332 (30%)
Neur_chan_LBD 63..272 CDD:280998 64/225 (28%)
Neur_chan_memb 284..511 CDD:280999 25/78 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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