DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and nAChRalpha7

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster


Alignment Length:283 Identity:65/283 - (22%)
Similarity:121/283 - (42%) Gaps:23/283 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 PTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMSEQYRILDVDW-LHSIWRPDC 142
            |..:.|.:|::.:..::|::...:|:|:|...|.|..||.  |.||...:.|:.. .|.:|:||.
  Fly    85 PLQLSFGLTLMQIIDVDEKNQLLITNIWLKLEWNDMNLRW--NSSEFGGVRDLRIPPHRLWKPDV 147

  Fly   143 FFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTV 207
            ...|:....|......|  :.:.::.:.||:.......:|.:....:|.|.|.|.|...  |.|.
  Fly   148 LMYNSADEGFDGTYATN--VVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFG--SWTY 208

  Fly   208 EDLVFIWNMTD-------PLVVNTEIELPQLDISNN--YTTDCTIEYSTGNFTCLAIVFNLRRRL 263
            :.......:.|       ..:.|.|.:|..:....|  |...|...|....|..|     :||:.
  Fly   209 DGFQLDLQLQDEAGGDISSFITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFAIL-----IRRKT 268

  Fly   264 GYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKAID 327
            .|:.|:..:|..||..|:.:.|.:.|:: ..:::||||.||:|........:::|..| .|..:.
  Fly   269 LYYFFNLIVPCVLIASMALLGFTLPPDS-GEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLG 332

  Fly   328 VWMSSCSVFVFLSLMEFAVVNNF 350
            .:.:.....|..|::...::.|:
  Fly   333 TYFNCIMFMVASSVVSTILILNY 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 43/192 (22%)
Neur_chan_memb 270..>350 CDD:280999 18/80 (23%)
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 65/283 (23%)
Neur_chan_LBD 61..268 CDD:280998 44/193 (23%)
Neur_chan_memb 275..552 CDD:280999 19/82 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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