DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and Gabrr3

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_001074659.1 Gene:Gabrr3 / 328699 MGIID:3588203 Length:464 Species:Mus musculus


Alignment Length:460 Identity:143/460 - (31%)
Similarity:223/460 - (48%) Gaps:58/460 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IALAIYLHALEQSIQHCHC------VHGYRNNTESAELVSH--YESSLSLPDILPIPSKTYDKNR 71
            |.|.:...|:::..|.|..      :...|...:....|.|  .|..|.:.|        :|.:.
Mouse    15 ITLMLDASAIKKPHQQCLSSPKQTRIRETRMRKDDLTKVWHPKREQLLHIED--------HDFST 71

  Fly    72 APKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMSEQYRILDVDWLHS 136
            .|...|.|..|...|.|.|:|||:|.:|.:....:|...|:|.||..|...::. ...|...|..
Mouse    72 RPGFGGSPVPVGIDVQVESIDSISEVNMDFTMTFYLRHYWKDERLSFPSTTNKS-MTFDRRLLQK 135

  Fly   137 IWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIE 201
            ||.||.||.::|:...|:.::.|..|.::.|..:|:..::|:...|.|.|..:|.|||.||:.:|
Mouse   136 IWVPDIFFVHSKRSFIHDTTVENIMLRVHPDGNVLFSLRITVSAMCFMDFSRFPLDTQNCSLELE 200

  Fly   202 SLSHTVEDLVFIWNMTDPLVVNTE--IELPQLDISN-NYTTDCTIEYSTGNFTCLAIVFNLRRRL 263
            |.::..|||:..|...:. .:|||  |.|.|..|.. :.::......|||.:..|.|.|.|||.:
Mouse   201 SYAYNEEDLMLYWKHGNK-SLNTEERISLSQFFIEEFSASSGLAFYSSTGWYYRLFINFVLRRHV 264

  Fly   264 GYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDV 328
            .:.:..||.|:.|:|::||:||||...|:||||:||:|::||::|..|....|:|.||||||:||
Mouse   265 FFFVLQTYFPAMLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTVVTGVSASMPQVSYVKAVDV 329

  Fly   329 WMSSCSVFVFLSLMEFAVVN-----------NFMGPV-------ATKAM--KGYSDENISDLDDL 373
            :|...|:|||||::|:|.||           |..|.:       |.:||  .|...::.:|:|..
Mouse   330 YMWVSSLFVFLSVIEYATVNYLTTVEEWKQLNRRGKISGMYHIDAVQAMAFDGCYHDSETDVDQT 394

  Fly   374 KSALQHHRESIIEPQYDTFC-----------HGHATAI------YIDKFSRFFFPFSFFILNIVY 421
            ..:|....:|:......:.|           .|:...|      .||.:||..||..:.|.|:.|
Mouse   395 SFSLHSEEDSMSTKFTGSPCADSSQIKRKSLGGNVGRIILENNHVIDTYSRIVFPTVYIIFNLFY 459

  Fly   422 WTTFL 426
            |..::
Mouse   460 WGIYV 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 64/197 (32%)
Neur_chan_memb 270..>350 CDD:280999 44/90 (49%)
Gabrr3NP_001074659.1 LIC 58..463 CDD:273305 135/414 (33%)
Neur_chan_LBD 59..264 CDD:280998 68/214 (32%)
Neur_chan_memb 271..460 CDD:280999 65/188 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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