DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HisCl1 and GABRG2

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_944493.2 Gene:GABRG2 / 2566 HGNCID:4087 Length:515 Species:Homo sapiens


Alignment Length:444 Identity:127/444 - (28%)
Similarity:215/444 - (48%) Gaps:91/444 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 YDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMSEQYRILDV 131
            ||....|.:..:||:::..:.|.|:..:|..:|.|..|||.||:|.|.||:.  |.:.:...|:.
Human    77 YDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKF--NSTIKVLRLNS 139

  Fly   132 DWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQIC 196
            :.:..||.||.||:|:||...|.::.||..|.:::|..:||..:||:...|.::..::|.|...|
Human   140 NMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEHSC 204

  Fly   197 SMMIESLSHTVEDL------------VFIWNMTDPLVVNTEIELPQLDISNNY------------ 237
            .:...|.|.::...            :..|..|||..:.:.:    ..||:.|            
Human   205 PLEFSSWSRSIAQAGMCSGVISAHYSLRFWGSTDPPTLASRV----AGISDGYPREEIVYQWKRS 265

  Fly   238 ----------------------TTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVM 280
                                  ||: .::.::|::..:::.|:|.||:||....||||..||||:
Human   266 SVEVGDTRSWRLYQFSFVGLRNTTE-VVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVL 329

  Fly   281 SWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFA 345
            ||:||||..:|:|||.:||:|::||:.|.:|.:::|||.||||.|:|:::|.|.:|||.:|:|:.
Human   330 SWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYG 394

  Fly   346 VVNNFMGPVATKAMKGYSDEN-----------ISDLDDLKSALQ-----HHRESIIEPQYDT--- 391
            .::.|:........|....:|           ..|:....:.:|     |.:|...|..|:.   
Human   395 TLHYFVSNRKPSKDKDKKKKNPLLRMFSFKAPTIDIRPRSATIQMNNATHLQERDEEYGYECLDG 459

  Fly   392 ------FC-----------HG--HATAIYIDKFSRFFFPFSFFILNIVYWTTFL 426
                  ||           ||  |.....:|.::|.|||.:|.:.|:|||.::|
Human   460 KDCASFFCCFEDCRTGAWRHGRIHIRIAKMDSYARIFFPTAFCLFNLVYWVSYL 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 57/240 (24%)
Neur_chan_memb 270..>350 CDD:280999 41/79 (52%)
GABRG2NP_944493.2 LIC 69..512 CDD:273305 126/441 (29%)
Neur_chan_LBD 69..312 CDD:280998 58/241 (24%)
Neur_chan_memb 319..509 CDD:280999 63/189 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.