DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HisCl1 and Glrb

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_445748.1 Gene:Glrb / 25456 RGDID:2706 Length:496 Species:Rattus norvegicus


Alignment Length:459 Identity:152/459 - (33%)
Similarity:222/459 - (48%) Gaps:87/459 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 SSLSLPDILPIPSK-----------TYDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDI 105
            |..|..|:..:|..           :||....|...|.|..|..::.:.|..||.|.:|.|..:|
  Rat    41 SQQSAEDLARVPPNSTSNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSFGSIQETTMDYRVNI 105

  Fly   106 FLAQSWRDPRLRLPENM-SEQYRILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKT 169
            ||.|.|.||||:||.:. ......:|......:|:||.||.|.|...||:::..|..|:::.|..
  Rat   106 FLRQKWNDPRLKLPSDFRGSDALTVDPTMYKCLWKPDLFFANEKSANFHDVTQENILLFIFRDGD 170

  Fly   170 LLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNMTDPLVVNTEIELPQLDIS 234
            :|...:|::.|||.:....:|.|||.|.|.:||..:|.:||.|||...||:.:. :|.|||.||.
  Rat   171 VLVSMRLSITLSCPLDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDPVQLE-KIALPQFDIK 234

  Fly   235 NNYTT--DCTIEY-STGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARV 296
            .....  :||..| .||.:||:.::|.|||::|:::...|.|:.||||:||:||||.|:|..|||
  Rat   235 KEDIEYGNCTKYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFWINPDASAARV 299

  Fly   297 TLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVV----NNFMGPVATK 357
            .||:.|:|:||::.|.....||.||||||:|||:.:|.:|.|.||:|:|||    ||.....|.|
  Rat   300 PLGIFSVLSLASECTTLAAELPKVSYVKALDVWLIACLLFGFASLVEYAVVQVMLNNPKRVEAEK 364

  Fly   358 AMKGYSDE---------------------NISDLD----------DLKSALQHHRESIIE----- 386
            |....:::                     :||.|.          ..||.|:.:..||:.     
  Rat   365 ARIAKAEQADGKGGNAAKKNTVNGTGTPVHISTLQVGETRCKKVCTSKSDLRSNDFSIVGSLPRD 429

  Fly   387 ---PQYDTFCHGH--------------------------ATAIYIDKFSRFFFPFSFFILNIVYW 422
               ..||  |:|.                          ..|..||.::|..|||.|...|::||
  Rat   430 FELSNYD--CYGKPIEVNNGLGKPQAKNKKPPPAKPVIPTAAKRIDLYARALFPFCFLFFNVIYW 492

  Fly   423 TTFL 426
            :.:|
  Rat   493 SIYL 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 73/198 (37%)
Neur_chan_memb 270..>350 CDD:280999 45/83 (54%)
GlrbNP_445748.1 LIC 43..495 CDD:273305 150/454 (33%)
LGIC_ECD_GlyR_beta 79..265 CDD:349811 69/186 (37%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 247..253 3/5 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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