DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and Glra2

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_001344028.1 Gene:Glra2 / 237213 MGIID:95748 Length:452 Species:Mus musculus


Alignment Length:414 Identity:154/414 - (37%)
Similarity:217/414 - (52%) Gaps:46/414 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 HYESSLSLPDIL-PIPSKT--YDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQS 110
            |...:||..|.| .:..:|  ||....|...|.|..|..::.:.|..|:.|.:|.|..:|||.|.
Mouse    37 HPSQTLSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQ 101

  Fly   111 WRDPRLRLPENMSEQYRILDVD--WLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYM 173
            |.|.||...|...:.   ||:|  .|.|||:||.||.|.|...||:::..|..|.:..:..:||.
Mouse   102 WNDSRLAYSEYPDDS---LDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYS 163

  Fly   174 SKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNMTDPLVVNTEIELPQLDISNNYT 238
            .:|||.|||.|..:::|.|.|.|:|.:||..:|:.||:|.|....|:.|...:.|||..:.....
Mouse   164 IRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKE 228

  Fly   239 TD-CTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTS 302
            .. ||..|:||.|||:.:.|:|.|::||:|...||||.|||::||:||||..:|.||||.||:|:
Mouse   229 LGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITT 293

  Fly   303 LLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVN------------------- 348
            :||:.||::.|:.|||.||||||||:||:.|.:|||.:|:|:|.||                   
Mouse   294 VLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQ 358

  Fly   349 NFMGPVATKA---MKGYSDENISDLDDLKSALQHHRESIIEPQYDTFCHGHATAI---------Y 401
            |....|..::   ..||...:...:.|..:........:.:|..|      |.||         .
Mouse   359 NKEEDVTRESRFNFSGYGMGHCLQMKDGTAVKATPANPLPQPPKD------ADAIKKKFVDRAKR 417

  Fly   402 IDKFSRFFFPFSFFILNIVYWTTF 425
            ||..||..||.:|.|.||.||.|:
Mouse   418 IDTISRAAFPLAFLIFNIFYWITY 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 73/197 (37%)
Neur_chan_memb 270..>350 CDD:280999 48/98 (49%)
Glra2NP_001344028.1 LIC 46..441 CDD:273305 150/403 (37%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 236..241 3/4 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.930

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