DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and lgc-32

DIOPT Version :10

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_508139.2 Gene:lgc-32 / 188603 WormBaseID:WBGene00020569 Length:390 Species:Caenorhabditis elegans


Alignment Length:386 Identity:70/386 - (18%)
Similarity:143/386 - (37%) Gaps:71/386 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 LPDILPIPSKTYDKNRAPKLLGQPTVVYFHVTVLSLDSI-----NEESMTYVTDIFLAQSWRDPR 115
            :|.::.....|.|::....|||:.:.....:.:.|...|     |..:....|:.|...||.:..
 Worm    12 IPIVVLCDDCTSDEDVIADLLGRNSHSSGEIVIKSNYKIAKWLYNSVAHELSTEGFFEMSWTNTT 76

  Fly   116 LRLPENMSEQYRILDV-DWLHSIWRPDCFF---------KNAKKVTFHEMSIPNHYLWLYHDKTL 170
            |.. .|::..::.:.: ..||..|.|..:|         :|...:..||..            .:
 Worm    77 LDF-TNLNACHKTVRIKSLLHIFWLPHVYFPFSYNLEESRNLYNIEIHESG------------NI 128

  Fly   171 LYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNMTD-----PLVVNTEIELPQ 230
            ....:|...:.|..:.:|:|.....|::.              |..|:     .:|:.....:..
 Worm   129 TLSKRLKQSIPCKEQSDSHPFSNNTCTLS--------------WKYTNLDNYQKIVIEPSNLMDS 179

  Fly   231 LDISNN---YTTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAI 292
            ::..::   ...|.|.|.|..:...|.  :.:.:...|.|.|.:.|:.|.::..|:|..:.|.||
 Worm   180 VEREHSRQFILKDVTFESSGDDEQRLH--YTITQTPQYLLLHFFFPALLFLIPPWLSLLLGPMAI 242

  Fly   293 PARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNF--MGPVA 355
             .|..:.:|||:.|:....::....|..:.:.||.:|.....::|...::|..::..|  ||...
 Worm   243 -TRCIILMTSLILLSNHYDRNVTVFPIDASLNAISIWQLFTYIYVIGIVIELIIITLFASMGRSK 306

  Fly   356 T------KAMKGYSDENISDLDDLKSALQHHRESIIEPQYDTFCHGHATAIYIDKFSRFFF 410
            |      ::.|...:....:::||:........:.        |  ...|:::|..|..||
 Worm   307 TCCFAKRRSAKYEMEPLYEEMNDLRQRKTRKTRNC--------C--RKAALFVDIASFIFF 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 LGIC_ECD_HisCl 78..262 CDD:349793 30/206 (15%)
Cys-loop 182..196 CDD:349793 3/13 (23%)
LGIC_TM_anion 265..>351 CDD:349851 22/87 (25%)
TM1 helix 265..288 CDD:349851 7/22 (32%)
TM2 helix 292..316 CDD:349851 6/23 (26%)
TM3 helix 324..350 CDD:349851 5/25 (20%)
lgc-32NP_508139.2 LGIC_ECD 61..>162 CDD:475126 20/127 (16%)

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