DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HisCl1 and lgc-41

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_001360683.1 Gene:lgc-41 / 183331 WormBaseID:WBGene00008022 Length:567 Species:Caenorhabditis elegans


Alignment Length:543 Identity:133/543 - (24%)
Similarity:213/543 - (39%) Gaps:176/543 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 SSLSLPDILPIPSKTYDKNRAPKL-----LGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSW 111
            |.|:.|:|..:..::  ..|.|..     ||....:|..    ||.:.....|::..|:::..||
 Worm    24 SPLTQPNIYNLLQQS--NTRPPTANASVPLGVKLGMYLE----SLGNFRSSEMSFDVDLYVYMSW 82

  Fly   112 RDPRLRLPENMSEQYRILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKL 176
            :||  ||..|.|:...|.:.:....||.||.:|.||::.:|.|:::||..|::..|.|:.|..:.
 Worm    83 QDP--RLAHNFSDYVLINNDEIRKQIWLPDLYFANARQASFQEVTVPNFNLFVAPDGTVAYSCRC 145

  Fly   177 TLVLSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNMTDPLVVNTEIELPQLDISNNYTTDC 241
            ||.::|::....||.|.|:||:.:.|.::..:.:...|...:|:..|.||.||:..|.:.....|
 Worm   146 TLTVACSLNLRYYPMDQQLCSIRVLSYAYIAKQVNVTWFDKNPVRFNEEIGLPEFQIEHVSNAYC 210

  Fly   242 T---------IEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVT 297
            .         ..|.:.:|:||:....|.|.:||:|..:|||:.|||::||:||||...|:|||||
 Worm   211 NGSYQYALTENSYKSDDFSCLSGNLFLSRSIGYNLVQSYIPTGLIVMISWVSFWIDRRAVPARVT 275

  Fly   298 LGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNFM----------- 351
            |..|:|::|.|.....:..||.|||.||||:|..:|..|||.:|:|||.:|::|           
 Worm   276 LSFTTLVSLTTLGNGLRFGLPQVSYAKAIDLWYGACMFFVFCALLEFATINSYMRKSEKFDSMAK 340

  Fly   352 ----------------------------------------------------------------- 351
                                                                             
 Worm   341 KMQSVVLTGRTRDYLVRGIKESMRIAGGAAGNVVDALNDDWCTYSTENGRKSFSAMVGDIFERAG 405

  Fly   352 -----------GPVATKAMKGY------------------------------------------- 362
                       |....|:.:||                                           
 Worm   406 NAISPRRNRYRGLKTEKSPRGYGKPDTVQDILSERIKFIDNEFDFDTKEDDEIPGNMAMSIYDNV 470

  Fly   363 ---SDENISDLDDLKSALQHHR--------------------ESIIEPQYDTFCHGHAT-AIYID 403
               .||..|..::.|.:.:..|                    :|:|...|......|:. |:.||
 Worm   471 SCRKDEADSSSEETKFSTKPKRNGTNGTRKYIDKSLNQSGQNDSLIVATYFQISANHSRHALKID 535

  Fly   404 KFSRFFFPFSFFILNIVYWTTFL 426
            |..|:.||.:|.:.|:.||..:|
 Worm   536 KSCRYLFPAAFLLWNVFYWWYYL 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 57/208 (27%)
Neur_chan_memb 270..>350 CDD:280999 42/79 (53%)
lgc-41NP_001360683.1 LIC 41..>332 CDD:273305 104/296 (35%)
LGIC_TM <527..557 CDD:365787 12/29 (41%)
TM4 helix 530..554 CDD:349850 9/23 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

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