DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and lgc-44

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_505954.2 Gene:lgc-44 / 179600 WormBaseID:WBGene00009790 Length:618 Species:Caenorhabditis elegans


Alignment Length:414 Identity:126/414 - (30%)
Similarity:200/414 - (48%) Gaps:59/414 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 VHGYR--NNTESAELVSHYESSLSLPDILPIPSK-TYDKNRAPKLLGQPTV-VYFHVTVLSLDSI 94
            ||.::  :...:..|...|:..|....|||...| .||..:.|.|....|| |...:.|.|:.:.
 Worm   223 VHDFKPLDQIMNQNLGLDYQRPLPSSTILPFLRKMEYDARQPPSLHVDDTVTVKVGIAVQSMSNF 287

  Fly    95 NEESMTYVTDIFLAQSWRDPRLRLPENMSEQYRILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPN 159
            ...:|.|..|.::..||.|||||  .::|....:.|..:|..|||||..|.|:|..|||:::..|
 Worm   288 ELSTMDYDLDAWVRMSWIDPRLR--HDLSRPILVNDYTFLKMIWRPDPIFTNSKYSTFHKVTYLN 350

  Fly   160 HYLWLYHDKTLLYMSKLTL------VLSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIW--NM 216
            .||:::.|..:....::.|      ::.|     .||||....|:.|.|:..|.:.:...|  :.
 Worm   351 FYLFIFPDGKIFMDMRVYLKPTAAQIVLC-----KYPHDNPAVSLKISSMGFTQDVVKLEWFSDT 410

  Fly   217 TDPLVVNTEIELPQLDISNNYTTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMS 281
            .|.:.:...:::|:|.|.:.:...|.....:|.::||...|.:.|.:|||:.:||||:|:.||.|
 Worm   411 NDAIWIEKNVKIPELSIRHLHPDTCNGVRKSGVYSCLEAKFYMHREVGYHIANTYIPTAICVVFS 475

  Fly   282 WISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAV 346
            |||.|:..|.:..|:.:.:|..|||:.:|..:::.||.||||||||:|....|.||||::::..|
 Worm   476 WISVWLPEEFVEGRIFVSLTVFLTLSAENNSAKEELPKVSYVKAIDIWFGFTSTFVFLTMLQALV 540

  Fly   347 V---------------NNFMGPVATKAMKGYSDENISDLDDLKSAL---QHHRESIIEPQYDTFC 393
            |               ||         :.|||...::     ||.|   .:||   :..|.||||
 Worm   541 VISLEHNSKRLRLKFENN---------LDGYSKYQMT-----KSMLLSRYYHR---MARQIDTFC 588

  Fly   394 HGHATAIYIDKFSRFFFPFSFFIL 417
            ......|::     .|..|..|::
 Worm   589 KVMYPVIFL-----LFLMFYVFVI 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 57/203 (28%)
Neur_chan_memb 270..>350 CDD:280999 38/94 (40%)
lgc-44NP_505954.2 Neur_chan_LBD 259..>417 CDD:280998 49/164 (30%)
Neur_chan_memb 464..>550 CDD:280999 37/85 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_129194
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.810

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