DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and lgc-37

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_499662.2 Gene:lgc-37 / 176694 WormBaseID:WBGene00013914 Length:483 Species:Caenorhabditis elegans


Alignment Length:460 Identity:125/460 - (27%)
Similarity:207/460 - (45%) Gaps:74/460 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 VHGY---------------RNNTESAELVSHYESSLSLPDILPIPSKTYDKNRAP-KLLGQPTVV 82
            :||:               |:.|.:..|:.:  ::..|..||    ...|||..| .....|..|
 Worm    13 IHGHHSQAVIDMKRQRLSSRSTTYNQTLIRY--TTKVLDTIL----LNQDKNFRPVNPDNSPLQV 71

  Fly    83 YFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRL-PENMSEQYRILDVDWLHSIWRPDCFFKN 146
            ...:::.|:..::|::|.:..|.:..|.|.|.||.. |.|.|:....|....|..||.||.:.:|
 Worm    72 EVDISIRSMGPVSEQNMEFSLDCYFRQKWLDRRLAFTPINPSKPEIPLASKMLKDIWIPDTYIRN 136

  Fly   147 AKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVEDLV 211
            .:|...|.:::||....:..|..:....:||:...|.|..:.:|.|||.|.:.:.||.:..:|:|
 Worm   137 GRKSYLHTLTVPNILFRVRSDGQVHVSQRLTIRSRCQMFLKKFPMDTQACPIEVGSLGYFSKDVV 201

  Fly   212 FIWN--MTDPLVVNTEIELPQLDISNNYTTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPS 274
            :.|.  ..|..:.||..:...|.:|.:........:|..|.:.|.:.|.|:|:.||::...|.|.
 Worm   202 YKWKDVELDAKMGNTLSQYQVLSLSKSERNVSDFRFSDRNISVLNVYFKLQRQQGYYILQIYTPC 266

  Fly   275 ALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFL 339
            .|:|||||:||||..||.||||:||:.::|:::|.....:..||.||:..|:||::.:|.||:|.
 Worm   267 TLVVVMSWVSFWINKEASPARVSLGIMTVLSMSTIGFGLRTDLPKVSHSTALDVYILTCFVFLFA 331

  Fly   340 SLMEFAVV--------------------NNFMGPVATKAMKGYSDENISDLDDLKSALQHHRESI 384
            :::|:||:                    |..||.:.|..:.|....:...:|||....:..|...
 Worm   332 AMVEYAVINYAQIVYIRKQIHDLKGLEQNTAMGQMFTAGLMGARRRDTIQVDDLTVEKEEARLKA 396

  Fly   385 IEPQYDTFC----HGHATAIY------------------------IDKFSRFFFPFSFFILNIVY 421
            : |.:...|    .|:.:..|                        ||.||:..||..:.|.|:.|
 Worm   397 V-PWWKKLCFKDEQGNTSMFYRMAVKAAIAKKTLRNGDPAEVVNKIDNFSKLAFPTLYIIFNVFY 460

  Fly   422 WTTFL 426
            |..:|
 Worm   461 WVAYL 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 54/198 (27%)
Neur_chan_memb 270..>350 CDD:280999 37/99 (37%)
lgc-37NP_499662.2 LIC 44..464 CDD:273305 119/424 (28%)
Neur_chan_LBD 45..254 CDD:280998 57/212 (27%)
Neur_chan_memb 262..461 CDD:280999 57/199 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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