DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HisCl1 and Glrb

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:XP_036018791.1 Gene:Glrb / 14658 MGIID:95751 Length:530 Species:Mus musculus


Alignment Length:509 Identity:159/509 - (31%)
Similarity:233/509 - (45%) Gaps:122/509 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 HCHCVHGYRNNTESAELVS----HYESSLSLPDILPIPSK-----------TYDKNRAPKLLGQP 79
            |||.       |..:||:.    |:....|..|:..:|..           :||....|...|.|
Mouse    32 HCHL-------TSDSELLGLQACHHSCQQSPEDLARVPPNSTSNILNRLLVSYDPRIRPNFKGIP 89

  Fly    80 TVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENM-SEQYRILDVDWLHSIWRPDCF 143
            ..|..::.:.|..||.|.:|.|..:|||.|.|.||||:||.:. ......:|......:|:||.|
Mouse    90 VDVVVNIFINSFGSIQETTMDYRVNIFLRQKWNDPRLKLPSDFRGSDALTVDPTMYKCLWKPDLF 154

  Fly   144 FKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVE 208
            |.|.|...||:::..|..|:::.|..:|...:|::.|||.:....:|.|||.|.|.:||..:|.:
Mouse   155 FANEKSANFHDVTQENILLFIFRDGDVLVSMRLSITLSCPLDLTLFPMDTQRCKMQLESFGYTTD 219

  Fly   209 DLVFIWNMTDPLVVNTEIELPQLDISNNYTT--DCTIEY-STGNFTCLAIVFNLRRRLGYHLFHT 270
            ||.|||...||:.:. :|.|||.||......  :||..| .||.:||:.::|.|||::|:::...
Mouse   220 DLRFIWQSGDPVQLE-KIALPQFDIKKEDIEYGNCTKYYKGTGYYTCVEVIFTLRRQVGFYMMGV 283

  Fly   271 YIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSV 335
            |.|:.||||:||:||||.|:|..|||.||:.|:|:||::.|.....||.||||||:|||:.:|.:
Mouse   284 YAPTLLIVVLSWLSFWINPDASAARVPLGIFSVLSLASECTTLAAELPKVSYVKALDVWLIACLL 348

  Fly   336 FVFLSLMEFAVV----NNFMGPVATKAMKGYSDE---------------------NISDLDDL-- 373
            |.|.||:|:|||    ||.....|.||....:::                     :||.|.:|  
Mouse   349 FGFASLVEYAVVQVMLNNPKRVEAEKARIAKAEQADGKGGNAAKKNTVNGTGTPVHISTLQELPM 413

  Fly   374 --------------------------------KSALQHHRESIIE--------PQYDTFCHGH-- 396
                                            ||.|:.:..||:.        ..||  |:|.  
Mouse   414 VCQQITYQLDGWPTDTLTTQVGETRCKKVCTSKSDLRSNDFSIVGSLPRDFELSNYD--CYGKPI 476

  Fly   397 ------------------------ATAIYIDKFSRFFFPFSFFILNIVYWTTFL 426
                                    ..|..||.::|..|||.|...|::||:.:|
Mouse   477 EVNNGLGKPQAKNKKPPPAKPVIPTAAKRIDLYARALFPFCFLFFNVIYWSIYL 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 73/198 (37%)
Neur_chan_memb 270..>350 CDD:280999 45/83 (54%)
GlrbXP_036018791.1 LIC 64..529 CDD:273305 148/467 (32%)
LGIC_ECD_GlyR_beta 89..275 CDD:349811 69/186 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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