DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and Glra4

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_034427.2 Gene:Glra4 / 14657 MGIID:95750 Length:456 Species:Mus musculus


Alignment Length:397 Identity:150/397 - (37%)
Similarity:218/397 - (54%) Gaps:47/397 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 YDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMSEQYRILDV 131
            ||....|...|.|..|..::.:.|..|:.|.:|.|..::||.|.|.||||...|...:.   ||:
Mouse    57 YDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNVFLRQQWNDPRLAYREYPDDS---LDL 118

  Fly   132 D--WLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQ 194
            |  .|.|||:||.||.|.|...|||::..|..|.::.:..:||..:|||:|||.|..:::|.|.|
Mouse   119 DPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQ 183

  Fly   195 ICSMMIESLSHTVEDLVFIWNMTDPLVVNTE-IELPQLDISNNYTTD-CTIEYSTGNFTCLAIVF 257
            .|:|.:||..:|:.||:|.|....|.|...| :.|||..:.:..... ||..|:||.|||:.:.|
Mouse   184 TCTMQLESFGYTMNDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDLGYCTKHYNTGKFTCIEVKF 248

  Fly   258 NLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSY 322
            :|.|::||:|...||||.|||::||:||||..:|.||||.||:|::||:.||::.|:.|||.|||
Mouse   249 HLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSY 313

  Fly   323 VKAIDVWMSSCSVFVFLSLMEFAVVN-------NFMGPVATKAMKGYSDENISDLDDLKSALQHH 380
            |||||:||:.|.:|||.:|:|:|.||       .|| .:..:..:...:|:|     ::.:..:.
Mouse   314 VKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFM-RLRRRQRRQRMEEDI-----IRESRFYF 372

  Fly   381 R------------------ESIIEPQYDT--FCHGHA-TAIYIDK------FSRFFFPFSFFILN 418
            |                  .||..||..|  ...|.. ..:|:|:      .||..|||:|.:.|
Mouse   373 RGYGLGHCLQARDGGPMEGSSIYSPQPPTPLLKEGETMRKLYVDRAKRIDTISRAVFPFTFLVFN 437

  Fly   419 IVYWTTF 425
            |.||..:
Mouse   438 IFYWVVY 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 75/198 (38%)
Neur_chan_memb 270..>350 CDD:280999 48/86 (56%)
Glra4NP_034427.2 LIC 9..444 CDD:273305 150/395 (38%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 236..241 3/4 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4045
OMA 1 1.010 - - QHG45222
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.880

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