DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and Gabra6

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:XP_036012221.1 Gene:Gabra6 / 14399 MGIID:95618 Length:459 Species:Mus musculus


Alignment Length:301 Identity:97/301 - (32%)
Similarity:158/301 - (52%) Gaps:17/301 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 YDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRL--PENMSEQYRIL 129
            ||....|...|..|.|...:.|.|...:::..|.|..|:|..|:|.|.||:.  |..:.....::
Mouse    43 YDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFKGPAEILSLNNLM 107

  Fly   130 DVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQ 194
                :..||.||.||:|.||...|.|:.||....|..:.|:||..:||:...|.|:..::|.|..
Mouse   108 ----VSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRLVNFPMDGH 168

  Fly   195 ICSMMIESLSHTVEDLVFIWNMTDPLVVNTEIELP-------QLDISNNYTTDCTIEYSTGNFTC 252
            .|.:...|.::...::::.|. ..||.   .:|:|       |.|:.....:..||:.:||.:..
Mouse   169 ACPLKFGSYAYPKTEIIYTWK-KGPLY---SVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVI 229

  Fly   253 LAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSL 317
            :.:.|:|:|::||.:...|.|..:.|::|.:||||..|::|||...|:|::||:.|.:..::.||
Mouse   230 MTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSL 294

  Fly   318 PPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNFMGPVATKA 358
            |.|||..|:|.:::.|..|||.:|:|||.||.|....:.||
Mouse   295 PKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQSQKA 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 56/203 (28%)
Neur_chan_memb 270..>350 CDD:280999 35/79 (44%)
Gabra6XP_036012221.1 LGIC_ECD_GABAAR_A6 42..239 CDD:349840 56/203 (28%)
LGIC_TM_GABAAR_alpha 242..337 CDD:349854 39/94 (41%)
TM1 helix 245..265 CDD:349854 7/19 (37%)
TM2 helix 274..295 CDD:349854 6/20 (30%)
TM3 helix 305..327 CDD:349854 10/21 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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