DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and Gabra6

DIOPT Version :10

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:XP_036012221.1 Gene:Gabra6 / 14399 MGIID:95618 Length:459 Species:Mus musculus


Alignment Length:301 Identity:97/301 - (32%)
Similarity:158/301 - (52%) Gaps:17/301 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 YDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRL--PENMSEQYRIL 129
            ||....|...|..|.|...:.|.|...:::..|.|..|:|..|:|.|.||:.  |..:.....::
Mouse    43 YDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFKGPAEILSLNNLM 107

  Fly   130 DVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQ 194
                :..||.||.||:|.||...|.|:.||....|..:.|:||..:||:...|.|:..::|.|..
Mouse   108 ----VSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRLVNFPMDGH 168

  Fly   195 ICSMMIESLSHTVEDLVFIWNMTDPLVVNTEIELP-------QLDISNNYTTDCTIEYSTGNFTC 252
            .|.:...|.::...::::.|. ..||.   .:|:|       |.|:.....:..||:.:||.:..
Mouse   169 ACPLKFGSYAYPKTEIIYTWK-KGPLY---SVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVI 229

  Fly   253 LAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSL 317
            :.:.|:|:|::||.:...|.|..:.|::|.:||||..|::|||...|:|::||:.|.:..::.||
Mouse   230 MTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSL 294

  Fly   318 PPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNFMGPVATKA 358
            |.|||..|:|.:::.|..|||.:|:|||.||.|....:.||
Mouse   295 PKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQSQKA 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 LGIC_ECD_HisCl 78..262 CDD:349793 52/192 (27%)
Cys-loop 182..196 CDD:349793 4/13 (31%)
LGIC_TM_anion 265..>351 CDD:349851 36/85 (42%)
TM1 helix 265..288 CDD:349851 8/22 (36%)
TM2 helix 292..316 CDD:349851 8/23 (35%)
TM3 helix 324..350 CDD:349851 12/25 (48%)
Gabra6XP_036012221.1 LGIC_ECD_GABAAR_A6 42..239 CDD:349840 56/203 (28%)
Cys-loop 156..170 CDD:349840 4/13 (31%)
LGIC_TM_GABAAR_alpha 242..337 CDD:349854 39/94 (41%)
TM1 helix 242..265 CDD:349854 8/22 (36%)
TM2 helix 269..293 CDD:349854 8/23 (35%)
TM3 helix 301..327 CDD:349854 12/25 (48%)

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