DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and Gabra3

DIOPT Version :10

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_001344745.1 Gene:Gabra3 / 14396 MGIID:95615 Length:523 Species:Mus musculus


Alignment Length:59 Identity:15/59 - (25%)
Similarity:27/59 - (45%) Gaps:7/59 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 IESLKLQL---EEGE----KDIAEAEKQAEPTTPQQEAELSETFKQMVRDRMKVKDVDE 135
            ||:...:|   |:.|    :|..|.|..:.|::|..|.......:|::.|.:....:||
Mouse   157 IENNSAELHFPEDNESSLSEDSLEQELDSPPSSPSDEDNELPVSQQLITDDICDSALDE 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 LGIC_ECD_HisCl 78..262 CDD:349793 15/59 (25%)
Cys-loop 182..196 CDD:349793
LGIC_TM_anion 265..>351 CDD:349851
TM1 helix 265..288 CDD:349851
TM2 helix 292..316 CDD:349851
TM3 helix 324..350 CDD:349851
Gabra3NP_001344745.1 LIC 100..509 CDD:455710 15/59 (25%)
LGIC_ECD_GABAAR_A3 106..305 CDD:349837 15/59 (25%)
Cys-loop 222..236 CDD:349837
Blue background indicates that the domain is not in the aligned region.

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