DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and gabra6

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:XP_031754593.1 Gene:gabra6 / 100488862 XenbaseID:XB-GENE-6049732 Length:455 Species:Xenopus tropicalis


Alignment Length:436 Identity:130/436 - (29%)
Similarity:203/436 - (46%) Gaps:59/436 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 NNTESAELVSHYESSLSLPDILPIPSKTYDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVT 103
            ||..:|.|  |.|:...:.|.|   ...||....|...|..|.|...:.|.|...:::..|.|..
 Frog    20 NNITAANL--HSENITRILDRL---LDGYDNRLRPSFGGPVTEVKTDIYVTSFGPVSDVDMEYTM 79

  Fly   104 DIFLAQSWRDPRLRLPENMSEQYRILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDK 168
            |||..|:|.|.||:. :..:|..|:.:: .:..||.||.||:|.||...|.|:.||....:..:.
 Frog    80 DIFFRQTWVDERLKF-DGPTEILRLNNL-MVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNG 142

  Fly   169 TLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNMTDPLVVNTEIELP---- 229
            |:||..:||:...|.|:..::|.|...|.:...|.::...::|:.|. ..||.   .:|:|    
 Frog   143 TVLYTMRLTIKAECPMRLMNFPMDGHACPLKFGSYAYPKSEIVYTWK-KGPLY---SVEVPEESS 203

  Fly   230 ---QLDISNNYTTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEA 291
               |.|:.....:..|:..:||.::...::|.|:|::||::.|||||.::.||:|.:.|||..|:
 Frog   204 SLLQYDLVGQKVSSETLLSNTGEYSLQVVMFFLQRKIGYYIIHTYIPCSMTVVLSQVVFWINKES 268

  Fly   292 IPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNFMG---- 352
            :|||...|:|::||:.|.:..::.|.|.|||..|:|.:::.|..|||.:|:|||.||.|..    
 Frog   269 VPARTVAGITTVLTMTTLSISARHSFPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQIQ 333

  Fly   353 --------PVATKAMKGYSDENISDLDDLKSALQHHRESIIE----------PQY---------- 389
                    ..|..|....::.....|.|....|:....|:..          |.|          
 Frog   334 KTMMKAAKKAALAAATARAENEFVTLSDSNCNLKKRINSVASQGNQSTEGDLPLYEDSPYNEQTD 398

  Fly   390 ---------DTFCHGHATAIYIDKFSRFFFPFSFFILNIVYWTTFL 426
                     ||....|.....|||::|..||.||...|:|||..:|
 Frog   399 IPTRDHMLSDTTSSQHTGTSKIDKYARILFPLSFAGFNLVYWVVYL 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 57/201 (28%)
Neur_chan_memb 270..>350 CDD:280999 36/79 (46%)
gabra6XP_031754593.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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