DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and gabrb1

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:XP_002664179.2 Gene:gabrb1 / 100331377 ZFINID:ZDB-GENE-090313-230 Length:484 Species:Danio rerio


Alignment Length:437 Identity:138/437 - (31%)
Similarity:216/437 - (49%) Gaps:82/437 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 KTYDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLR---LPENMSEQY 126
            |.||....|...|.|..|...:.:.|:|.::|.:|.|...::..|||||.||.   :|.|::...
Zfish    54 KGYDIRLRPDFGGPPVDVGMSIDISSIDMVSEVNMDYTITMYFQQSWRDKRLSYTGIPLNLTLDN 118

  Fly   127 RILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPH 191
            |:.|     .:|.||.:|.|.||...|.:::.|..:.|:.|.|:||..::|...:|.|....||.
Zfish   119 RVAD-----QLWVPDTYFINDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPL 178

  Fly   192 DTQICSMMIESLSHTVEDLVFIWNMTDPLVVNTEIELPQLDISNNYTTDCTIEYSTGNFTCLAIV 256
            |.|.|::.|||..:|.:|:.|.|.....:.....|||||..|.:..|....:.::||::..|::.
Zfish   179 DEQNCTLEIESYGYTTDDIEFYWQGGSSVTGVDNIELPQFSIIDYKTLSKKVVFATGSYPRLSLS 243

  Fly   257 FNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS 321
            |.|:|.:||.:..||:||.||.::||:||||..:|..|||.||:|::||:.|.||..:::||.:.
Zfish   244 FKLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP 308

  Fly   322 YVKAIDVWMSSCSVFVFLSLMEFAVVNNFM---GP-----VATKAMKGYSDEN------------ 366
            ||||||:::..|.|||||:|:|:|.||...   ||     ||.||.|..::::            
Zfish   309 YVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGRGPHLQKKVAEKAAKSNNEKSRLESNKVQVDVH 373

  Fly   367 ----ISDLD------DLKSALQHHRESIIEPQYDTF------------CHGHATAIY-------- 401
                :::||      ::..||...|.::.  .||:.            .:|..||..        
Zfish   374 GSIPLTNLDLRLSGAEMLGALGDPRNTMF--SYDSASIQYRKPLTGRDLYGRPTASIERPLAPKK 436

  Fly   402 ----------------------IDKFSRFFFPFSFFILNIVYWTTFL 426
                                  |||:||..||.::...|:|||..::
Zfish   437 SRLRRRAAQLKVKIPDLTDVNAIDKWSRVIFPITYTFFNLVYWLYYV 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 63/197 (32%)
Neur_chan_memb 270..>350 CDD:280999 43/79 (54%)
gabrb1XP_002664179.2 LIC 19..482 CDD:273305 138/434 (32%)
Neur_chan_LBD 49..250 CDD:280998 65/200 (33%)
Neur_chan_memb 257..479 CDD:280999 69/223 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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