DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and gabra2a

DIOPT Version :10

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:XP_009305482.1 Gene:gabra2a / 100150704 ZFINID:ZDB-GENE-141216-16 Length:451 Species:Danio rerio


Alignment Length:401 Identity:125/401 - (31%)
Similarity:194/401 - (48%) Gaps:56/401 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 YDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRL--PENMSEQYRIL 129
            ||....|.|..:.|.|...:.|.|...:::..|.|..|:|..|.|.|.||:.  |.|:.....::
Zfish    53 YDNRLRPGLGDRVTEVKTDIYVTSFGPVSDTDMEYTVDVFFRQRWTDERLKFHGPMNILRLNNLM 117

  Fly   130 DVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQ 194
                ...||.||.||.|.||...|.|::||..|.:..:.||||..:||:...|.|..|.:|.|..
Zfish   118 ----ASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIMENGTLLYTMRLTVQAECPMHLEDFPMDFH 178

  Fly   195 ICSMMIESLSHTVEDLVFIWNMTDPLVVNTEIE---LPQLDISNNYTTDCTIEYSTGNFTCLAIV 256
            .|.:...|.::|:.::.::|.....|.|....:   |.|.|:........||:.|||.:|.:...
Zfish   179 SCPLKFGSYAYTLTEVTYVWTRNATLSVEVAPDGSRLNQYDLMGQTVGKETIKSSTGEYTVMTAH 243

  Fly   257 FNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS 321
            |:|:|::||.:..||:|..:.|::|.:|||:..|::|||...|||::||:.|.:..::.|||.|:
Zfish   244 FHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVA 308

  Fly   322 YVKAIDVWMSSCSVFVFLSLMEFAVVNNFMGPVATKAMKGYSDENISDLDDLK------------ 374
            |..|:|.:::.|..|||.:|:|||.||.|     ||  :|::.:..|.::|.|            
Zfish   309 YATAMDWFIAVCYAFVFSALIEFATVNYF-----TK--RGWAWDGKSIVNDKKKETSVMKKNNAY 366

  Fly   375 --------------SALQHHRES----------IIEPQYDTFCHGHATAIYIDKFSRFFFPFSFF 415
                          |||....:|          :.:....||    .:...||:.||..||..|.
Zfish   367 AVAVANYAPHIAKDSALPTVSKSATPEPSKAQPVAKETKKTF----NSVSKIDRMSRIIFPVLFG 427

  Fly   416 ILNIVYWTTFL 426
            ..|:|||.|:|
Zfish   428 SFNLVYWATYL 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 LGIC_ECD_HisCl 78..262 CDD:349793 57/188 (30%)
Cys-loop 182..196 CDD:349793 5/13 (38%)
LGIC_TM_anion 265..>351 CDD:349851 36/85 (42%)
TM1 helix 265..288 CDD:349851 9/22 (41%)
TM2 helix 292..316 CDD:349851 9/23 (39%)
TM3 helix 324..350 CDD:349851 12/25 (48%)
gabra2aXP_009305482.1 LIC 17..437 CDD:455710 123/398 (31%)
LGIC_ECD_GABAAR_A2 47..249 CDD:349836 61/199 (31%)
Cys-loop 166..180 CDD:349836 5/13 (38%)

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