DRSC/TRiP Functional Genomics Resources

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Protein Alignment HisCl1 and gabrb3

DIOPT Version :9

Sequence 1:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster
Sequence 2:NP_001096164.1 Gene:gabrb3 / 100124708 XenbaseID:XB-GENE-6030743 Length:475 Species:Xenopus tropicalis


Alignment Length:434 Identity:134/434 - (30%)
Similarity:214/434 - (49%) Gaps:77/434 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 KTYDKNRAPKLLGQPTVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLR---LPENMSEQY 126
            |.||....|...|.|..|..::.:.|:|.::|.:|.|...::..|.|||.||.   :|.|::...
 Frog    46 KGYDIRLRPDFGGSPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYTGIPLNLTLDN 110

  Fly   127 RILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPH 191
            |:.|     .:|.||.:|.|.||...|.:::.|..:.|:.|.|:||..::|...:|.|....||.
 Frog   111 RVAD-----QLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPL 170

  Fly   192 DTQICSMMIESLSHTVEDLVFIWNMTDPLVVNTE-IELPQLDISNNYTTDCTIEYSTGNFTCLAI 255
            |.|.|::.|||..:|.:|:.|.|...|..|...| |||||..|.::......:.::||::..|::
 Frog   171 DEQNCTLEIESYGYTTDDIEFYWLGGDNAVTGVERIELPQFSIMDHKLVSKNVVFATGSYPRLSL 235

  Fly   256 VFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPV 320
            .|.|:|.:||.:..||:||.||.::||:||||..:|..|||.||:|::||:.|.||..:::||.:
 Frog   236 SFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI 300

  Fly   321 SYVKAIDVWMSSCSVFVFLSLMEFAVVNNFM---GP-----VATKAMKGYSDE------------ 365
            .||||||:::..|.|||||:|:|:|.||...   ||     :|.|:.|...|.            
 Frog   301 PYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKSAKSNKDHSKFESNRVDAHG 365

  Fly   366 --------------------NISDLDDL-----KSALQHHRESII------------EPQYDTFC 393
                                ::||..:.     .|.:|:.::|..            .|...|..
 Frog   366 NILLTTLEIHNEVTGNEITTSVSDARNSATSFDNSGIQYRKQSTARDSLGRRTADRNHPPKKTHL 430

  Fly   394 HGHATAI-----------YIDKFSRFFFPFSFFILNIVYWTTFL 426
            ...::.:           .||::||..||.:|.:.|::||..::
 Frog   431 RRRSSQLKIKIPDLTDVNAIDRWSRIVFPITFSLFNLIYWLYYI 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 64/198 (32%)
Neur_chan_memb 270..>350 CDD:280999 43/79 (54%)
gabrb3NP_001096164.1 LIC 11..473 CDD:273305 134/431 (31%)
Neur_chan_LBD 41..243 CDD:280998 66/201 (33%)
Neur_chan_memb 250..470 CDD:280999 64/219 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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