DRSC/TRiP Functional Genomics Resources

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Protein Alignment prd1 and Plekhm2

DIOPT Version :9

Sequence 1:NP_650115.1 Gene:prd1 / 41425 FlyBaseID:FBgn0037949 Length:1354 Species:Drosophila melanogaster
Sequence 2:NP_001178696.1 Gene:Plekhm2 / 313667 RGDID:1307005 Length:1031 Species:Rattus norvegicus


Alignment Length:1057 Identity:199/1057 - (18%)
Similarity:359/1057 - (33%) Gaps:303/1057 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 DNSSKMIFGSLKSIFTMPLPERGVPEGSEDLQ--AVVECVPELEQT-------------PEH--- 408
            |:.|...|.|:.|. .:...:..:...|||..  .|...||.:..|             |..   
  Rat   190 DSLSLNSFNSVTST-NLEWDDSAIAPSSEDYDFGDVFPAVPSVPSTDWEDGDLTDTISGPRSTAS 253

  Fly   409 ---KSRPAAESPPLRAKPFLSKSLD-GSKQAQPVKKFVHNVD---EQLRHKNEDDGASSTEASPM 466
               .|:.:.:||..|..||..:..: .|.:..|    ||...   |:.:..::.|..:..|...:
  Rat   254 DLTSSKASTKSPTQRHNPFNEEQAESASSETTP----VHTTSQEKEEAQAPDQPDACTELEVIRV 314

  Fly   467 ESKQSLMLHRQEEFDKETVPM------------GSAQGEFRSKFII-NCESTVFEHTGVSYETGD 518
            ..|:.:...::.:.|:|..|:            |...|...:..:. ||..|:.   ....|.|:
  Rat   315 TKKKKIGKKKKTKLDEEASPLHPNCSQQKCGRQGDGDGLVGTPGLARNCSDTIL---ASPQEQGE 376

  Fly   519 LQSELSSGIQHTSVASLLEQNTPIAEPAASQIKKSFLDAPIAKTFSNFFRSFKDSTPVAKDEQAV 583
            .....:...:|:.::.:     .:..|.........|..|::|......                
  Rat   377 GPGSTAGSCEHSELSQM-----GLLIPEMKDTSMECLGQPLSKVIDQLH---------------- 420

  Fly   584 TDNYFASKIAKPQQQAPAAGKLQRNFSSSTISEPSSNTNTSSNHQIAMNPQLGNAERQSRHLPSP 648
                               |:|..:...|.:..|..:..|.|..:....|...:.   |..||:|
  Rat   421 -------------------GQLDPSTWCSRVEPPDQSFRTGSPGEAPEKPPFCDF---SEGLPAP 463

  Fly   649 LKKRGQPLQPPR-------YYDQQHPHQSRSLHSPSAYLAAGRGGPGGSGRDSKSTILSEEFDDI 706
            :......::.|.       ::|.  |..|:.||.|.:...|.:...||.|....|..|.::....
  Rat   464 MDFYRFTVESPSTVAPGGGHHDP--PGSSQPLHVPGSPAPALQEEEGGRGEGQTSQPLEDQQGKE 526

  Fly   707 LTITTTDTTNARSMDSDLVIVDYTDVDYAHLLKPPAPAAKTSLINRFLRNVTQKK--IMETSIRK 769
            :     .....:..||.|.:|.          :.|.|           ..|:|.:  ..||..: 
  Rat   527 I-----QEPEPQEPDSQLPLVS----------QEPGP-----------EPVSQPEPGTQETLCK- 564

  Fly   770 NNFFADKLRTEQRHAGSDLYVKGARPKN-YELIDDLNAEIAMEIEMCGTNSPRRELAISLDNDFQ 833
                                :||.:|.. ....:|...:.       |..||..   ::..::|:
  Rat   565 --------------------LKGDQPSPCLSSAEDSGVDE-------GQGSPSE---MTHPSEFR 599

  Fly   834 GNLSNFELGIGEISIDVFKGKSLFNLKQSNEQLMKAFKLYTGYNVDGIMTPVLVLLTDKTLYVVN 898
            .:.::..|    :.|.||        :::.|||.|..::.||: ::|.:..:.|||||..:|::.
  Rat   600 VDNNHLLL----LMIHVF--------RENEEQLFKMIRMSTGH-MEGNLQLLYVLLTDCYVYLLR 651

  Fly   899 MEGNS--LCVKFVLAYKDLDVILMGPFGNTVLLSNSNRDMQQVLLAGGPYPAGSLVANLELCARR 961
            .....  ..|:..::|.:||.:.:|....||.|..:||..|.:|.......|...:|:|: .|..
  Rat   652 KGATEKPYLVEEAVSYNELDYVSVGLDQQTVKLVCTNRRKQFLLDTADVALAELFLASLK-SAMI 715

  Fly   962 SGSTLP----AVGQLTLEHLAPLQAFVRANSCVGVAEHWMLYAVVNVPAGGSMRVESP-SELLGP 1021
            .|...|    .:...|:|.||..:...:.:.|..        :.|.|...|.:..|.| .|.|||
  Rat   716 KGCREPPYPSVLTDATMERLALAKFVAQESKCEA--------STVTVHFYGLVHWEDPMEEALGP 772

  Fly  1022 ------------SMKGFLMHRRLRQTISTSAANRIFWQPGYFLLKAGVLYMFNDSTQRLP--SWA 1072
                        :.:|.|.::     .|||...:..|:..:.:|..|:||.:.|.|..:|  |..
  Rat   773 VPCQCSPAEGTITKEGMLHYK-----ASTSYLGKEHWKACFVVLSNGILYQYPDRTDVIPLLSVN 832

  Fly  1073 MALAECQGARRTVKSERPHCFEITLKGE-VLQMAAPDEYVASEWLQALLQSASGLVVQE--EKHK 1134
            |...:|.|.||:..::|||.|::.|... .|:::|..|...::|:|.|.|:.|..|:.:  ....
  Rat   833 MGGEQCGGCRRSNTTDRPHAFQVILADRPCLELSADSEAEMADWMQHLCQAVSKGVIPQGIAPSP 897

  Fly  1135 TLGCTLIVTDNHLITLREDFSAPLRKISQQADNNAAVQGNKETMLEEDMLSVFETSSLMGSTIST 1199
            .:.|.|::|::.|.|..||...                            |.|.:          
  Rat   898 CIPCCLVITEDRLFTCHEDCQT----------------------------SFFRS---------- 924

  Fly  1200 PTRGTQHSYSSLSSTPTKQTNEDAAPKETVASPEKSQRMTSVYGKNSGLAILTCADIKEMTGIKI 1264
                                                               |..|.:.::|.|..
  Rat   925 ---------------------------------------------------LGTARLADITAIST 938

  Fly  1265 TSRSETWWCILEFSCQEAPLENQDDLVIFFASSMEMQRFLRLLEQLWQSKNNDLFPITILDDGDS 1329
            ....|  :|:|||| |::| :.....||:.:.:.|:.|||..|...|::......|...:.:. |
  Rat   939 ELGKE--YCVLEFS-QDSP-QLPKPWVIYMSCTSELDRFLTALSSGWKAIYQVDLPHKAIHEA-S 998

  Fly  1330 LAEQYNKLYMDTNRAWE 1346
            :.:::.......:.||:
  Rat   999 IKQKFEDALSLIHSAWQ 1015

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prd1NP_650115.1 PH 1021..1119 CDD:278594 30/112 (27%)
PH_SKIP 1022..1126 CDD:270119 32/106 (30%)
Plekhm2NP_001178696.1 RUN 93..156 CDD:214736
PH 784..885 CDD:278594 31/105 (30%)
PH_SKIP 785..887 CDD:270119 32/106 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I11034
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto97499
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46556
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
44.060

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